Paraburkholderia atlantica CCGE1002: BC1002_0334
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Entry
BC1002_0334 CDS
T01217
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
bge
Paraburkholderia atlantica CCGE1002
Pathway
bge03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BC1002_0334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bge03400
]
BC1002_0334
DNA repair and recombination proteins [BR:
bge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BC1002_0334
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BC1002_0334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_23
nSTAND1
BCA_ABC_TP_C
AAA_21
DnaJ_CXXCXGXG
nSTAND3
RsgA_GTPase
AAA_25
Viral_helicase1
cobW
Motif
Other DBs
NCBI-ProteinID:
ADG14441
UniProt:
D5WBB2
LinkDB
All DBs
Position
1:complement(358213..361086)
Genome browser
AA seq
957 aa
AA seq
DB search
MEQIRIRGARTHNLKNVNLDLPRHKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARVGTPYC
PDHEIPLEAQSVSQMVDAALALPEETRVMILAPVVSDRKGEHTDLFEDMQAQGFVRFRVR
SGGGTANEGTAKIYEVDSLPKLKKNDKHTIDVVIDRLRVRPDMKQRLAESFETALRLADG
RAIALEMDTDKEHLFSSKFACPICSYSLQELEPRLFSFNNPMGACPECDGLGQITFFDPK
RVVAHPSLSLAAGAVKGWDRRNQFYFQMLQSLAAFYDFDIDTAFEDLPEKVRKILLYGSG
KQEIPFSYINERGRTSVREHVFEGIIPNLERRYRETDSSAVREELAKYQNNQPCPACAGT
RLRREARFVRIGADSDARGIFEISGWPLRDALGYFQTLRLEGSKREIADKVVKEIVARLM
FLNNVGLDYLSLERSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLI
STLKHLRDLGNSVIVVEHDEDMIRMADYVVDMGPGAGEHGGMVIAEGTPKEIQKNAASLT
GQYMSGARTIEYPDERKEPDERHLRIVEAHGNNLHNVTLDLPVGLLTCVTGVSGSGKSTL
INDTLYHAVAHHLYGSATEPAPYESIEGLEHFDKVINVDQSPIGRTPRSNPATYTGLFTP
IRELFAGVPAAKERGYDPGRFSFNVKGGRCESCQGDGVLKVEMHFLPDVYVPCDVCHGKR
YNRETLDIQYKGSNISEVLDMTVEHAYEFFKAVPVVARKLKTLLDVGLGYIRLGQSATTL
SGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIALLLEVIHRLRDQGNTVVIIEH
NLDVIKTADWVIDLGPEGGAGGGQIIAQGTPEQIAKSKASFTGKYLAPLLKRAASAK
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
gtggaacaaatccgtattcgtggggctcgcacccacaacctgaagaacgtcaatctcgac
ctaccgcgtcacaagctcgtcgttatcacggggctttcgggctccggcaaatcgtcgctg
gcgttcgatacgctgtatgcggaaggacagcggcgctacgtcgaaagtctgtcggcctac
gcgcggcagttcctgcaactgatggaaaagccggacgtcgacctgatcgaagggttgtcg
ccggccatctcgatcgaacagaaggcgacctcgcacaatccgcggtcgacggtcggcacc
gtcaccgaaatccacgactatctgcgtctgctgttcgcgcgcgtcggcacgccctactgc
cccgatcacgagattccgctcgaagcgcaaagcgtgtcgcagatggtcgacgcggcgctc
gcactgcctgaagaaacgcgcgtgatgatcctcgcgcccgtcgtcagcgatcgcaagggc
gagcacacggatctgttcgaggacatgcaggcgcaaggcttcgtgcgctttcgcgtgcgc
tcgggcggcggcaccgccaacgaaggcaccgcgaaaatctacgaagtcgactcgctgccg
aagctgaagaagaacgacaagcacacgatcgacgtcgtgatcgaccgtctgcgcgtgcgt
cccgacatgaagcagcgtctcgccgaatcgttcgaaacggcgctgcgtctcgccgacggc
cgcgcgatcgcgctcgaaatggatacggacaaggagcatctgttcagctcgaagttcgcc
tgcccgatctgttcgtattcgctgcaggagctcgagccgcggctgttctcgttcaacaat
ccgatgggcgcgtgccccgagtgcgacggcctcggccagatcacgttcttcgatccgaag
cgggtggtcgcgcatccgtcgctgtcgctcgcggcgggcgcggtgaagggctgggaccgg
cgcaaccagttctacttccagatgctgcagagcctcgcggcgttctacgacttcgacatc
gacaccgcgttcgaagatttgccggagaaggtccgcaagatcctgctgtacggttcgggc
aagcaggagattccgttctcgtacatcaacgagcgcggccgcacgtcggtgcgcgagcac
gtgttcgaagggatcatcccgaatctggagcggcgctaccgcgaaaccgattcgtccgca
gtgcgcgaagagctcgccaagtatcagaacaaccagccttgcccggcgtgcgcgggcacg
cgactgcgtcgcgaggcgcgcttcgtgcgcatcggcgccgacagcgacgcgcgcggcatc
ttcgagatcagcggctggccgttgcgcgatgcgctcggctactttcagacgctgcgcctc
gaaggctcgaagcgcgagatcgccgacaaggtcgtcaaggagatcgtcgcgcgactgatg
ttcctgaacaacgtcgggctcgattacctgtcgctggaacgcagcgcggaaacgctgtcg
ggcggcgaagcgcagcgcattcgcctcgcctcgcagatcggctcggggctgaccggcgtg
atgtacgtgctcgatgaaccgtcgatcggcctgcatcagcgcgacaacgaccggctgatc
tcgacgctcaagcatctgcgcgatctcggcaattcggtgatcgtcgtcgagcacgacgag
gacatgatccgcatggccgactacgtagtcgacatgggcccgggcgccggcgagcacggc
ggcatggtgatcgccgagggcacgcccaaagagatacagaagaacgcggcgtccctgacg
ggccagtacatgtcaggcgcgcgcacgatcgaatacccggacgagcgcaaggaacccgac
gagcggcacctgcgcatcgtcgaggcgcacggcaacaatctgcataacgtgacgctcgat
ctgcccgtgggtcttttgacctgcgtgaccggcgtgtccggctcgggcaagtcgacgctg
atcaacgacacgctgtatcacgcggtcgcgcatcatctgtacggttcggccacggagccg
gcgccgtacgagtcgatcgagggcctcgagcacttcgacaaggtgatcaacgtcgaccag
tcgccgatcggccgcacgccgcgctcgaatccggcaacctacacgggccttttcacgccg
atccgcgagctgttcgcgggcgtgccggccgccaaggagcgcggctacgatcctggccgc
ttctcgttcaacgtgaagggcgggcgttgcgaatcgtgccagggcgacggtgtgctgaag
gtcgaaatgcacttcctgcccgatgtgtacgtgccgtgcgacgtgtgccacggcaagcgc
tacaaccgcgaaacactcgacatccagtacaaaggcagcaacatcagcgaagtgctcgac
atgacggtcgagcacgcgtatgagttcttcaaggccgtgccggtcgtcgcgcgcaagctg
aaaaccttgctggacgtgggtctaggctatatccgcctgggtcagtcggcgaccacgcta
tcgggcggcgaggcgcagcgtgtgaaactatcgctggaactgagcaagcgcgataccggt
cgcacgctatacattcttgacgaaccgaccaccggcctgcactttcacgatatcgcgctg
ttgctggaggtcatacaccggttacgtgaccagggtaataccgtcgtgatcatcgaacat
aatctcgatgtaatcaaaaccgcggactgggtcatcgatcttggccccgaaggcggcgcc
ggcggcgggcagatcatcgcccagggcacgcccgagcagatcgcgaagtcgaaggccagt
tttaccggaaaatatctggcgccgctgctcaagcgcgccgccagtgcaaaataa
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