Paraburkholderia atlantica CCGE1002: BC1002_0878
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Entry
BC1002_0878 CDS
T01217
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bge
Paraburkholderia atlantica CCGE1002
Pathway
bge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BC1002_0878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bge03019
]
BC1002_0878
Enzymes [BR:
bge01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BC1002_0878
Messenger RNA biogenesis [BR:
bge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BC1002_0878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Fe-ADH
P-loop_SecA
RPC3_helical
Motif
Other DBs
NCBI-ProteinID:
ADG14974
UniProt:
D5W5D2
LinkDB
All DBs
Position
1:976652..978106
Genome browser
AA seq
484 aa
AA seq
DB search
MSDTAVTPSTETFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTG
KTASFSLPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAV
VFGGVDMNPQSDQLRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVA
EGDKTGAVVQLIRERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQAL
DAFKRGEVEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
CSPNERKQLADIEKLIKRPLDLQRLTVEAPVRHHHDDRSLRRERSESRDERSRRRSGGAS
GSYDRPHHHRAQPIDDFFLKPYEPSPASVRKVEETAAPQKTAPKRQLAALLGGFGMPRKT
PSSS
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacagccgtcacgcccagcaccgagacttttgatcaattcggcctcgcgccc
gacatcctgaaggccatcaaggaatcgggctacacatcgcccacgccgatccaggcgaag
gcgatcccggtcgtgctggcgggccgtgacgtgatgggcgccgcgcagaccggtaccggc
aagactgcgagcttctcgctgccgatcatccaacgtctgctgccgcaagccaatacgagc
gcatcgccggcacgccatccagtgcgtgcgctgatcctcacgccgacccgcgagctcgcc
gaccaggtcgccgcgaacgtgcaggcctacgcgaagcacacggcgctgcgcagcgctgtc
gtgttcggcggcgtcgatatgaatccgcagtcggaccagctgcgccgcggcgtcgaaatc
ctgatcgcgacgccgggccgtctgctcgatcacgtgcagcagaaaaccgcgaacctgggc
caggtgcagatgctcgtgctcgacgaagccgaccgcatgctcgacatgggctttctgccc
gacctgcagcgcatcctgaacctgctgccgaaagagcgccagacgctgctgttctccgca
actttctcaggcgaaatcaagaagctcgccgcgacctatctgcgcaacccgcagaccatc
gaagtcgcgcgcagcaactcgaccgcgaccaatgtcacgcaggtcgtctacgaagtcgcc
gagggcgacaagaccggcgcggtcgtgcaactgatccgcgagcgcggcctgaagcaggtg
atcgtgttctgcaacagcaagatcggcgcgagccggctcgcgcgcagcctcgaacgcgac
ggcgtggtcgcgaccgcgattcacggcgaccgctcgcaaagcgagcgcatgcaggcgctc
gacgcgttcaagcgcggcgaagtcgaggcgctggtcgcgaccgatgtcgccgcgcgcggt
ctcgatatcgccgaactgccggcggtgatcaacttcgacctgccgttcaacgccgaagac
tacgtgcaccggatcggccgtaccggccgcgcgggcgcatcgggcgacgcgctgtcgctg
tgcagcccgaacgagcgcaagcaactggccgacatcgagaagctgatcaagcgtccgctc
gacttgcagcgcctgaccgtcgaggcgccggtgcgccatcatcacgatgatcgttcgctg
cgccgtgagcgcagcgaatcgcgcgacgagcgcagtcgccgtcgcagcggcggggcgtcg
ggttcgtatgaccgtccgcatcatcatcgcgcgcagccgatcgacgatttcttcctgaag
ccgtacgagccgtcgccggcatcggtgcgcaaggtcgaggagacggctgcgccgcaaaag
acggcgccgaagcggcaactggctgcgttgctcggtggcttcggcatgccgaggaagacg
ccttcgtcttcgtaa
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