Paraburkholderia atlantica CCGE1002: BC1002_1055
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Entry
BC1002_1055 CDS
T01217
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
bge
Paraburkholderia atlantica CCGE1002
Pathway
bge03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BC1002_1055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bge03400
]
BC1002_1055
DNA repair and recombination proteins [BR:
bge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BC1002_1055
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BC1002_1055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_29
AAA_21
SMC_N
AAA_16
nSTAND1
AAA_33
AAA_22
RsgA_GTPase
AAA_23
AAA_25
AAA_18
NACHT
UvrA_DNA-bind
Viral_helicase1
nSTAND3
ATPase
DnaJ_CXXCXGXG
SbcC_Walker_B
DUF4350
RNA12
DUF87
Motif
Other DBs
NCBI-ProteinID:
ADG15144
UniProt:
D5W673
LinkDB
All DBs
Position
1:1164606..1170554
Genome browser
AA seq
1982 aa
AA seq
DB search
MSSNDATPDTLADTPQAGKPSSNKTQGTIRIRGARQHNLKNVDLDVRTGEMTVVTGPSGS
GKSSLVFDTLYAEGQRRYVETFSAYARQFLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSR
STVGTMTELNDHLKLLYARAAELFDRQTAHPVRHDTPETIYAELLERTAQEEPRLVVTFP
VELPESASEQEVEQWLSASGYTRVQAQREVDSPTGKRKLLDVVADRFRLRSVDKARAIEA
IEASLKRGGGRVNIYVLPATSDEPQTAAAEPRIWRFSTGLHSPESDLRYADPQPALFSFN
SAYGACDACRGFGRVIGVDLGLVIPDARKTLREGAVKPMQTPAWKECQDDLMRYAAKADI
RRDTPWGELSERERNWVINGSPDWNGKWQTHWYGVKRFFDYLESKAYKMHIRVLLSKYRS
YTPCETCGGARLKTESLLWRLGSNANANDVLAPEHRFMPRGVQWSRAQLEALPGLTVHDL
MLMPIERIRRFFDDITLPSALLDDALKLLLAEVRTRLKYLCDVGLGYLTLDRQSRTLSGG
EVQRINLTTALGTSLTKTLFVLDEPSIGLHPRDLNRIVEAMHRLRDAGNTLVVVEHDPSV
MLAADRLIDMGPGPGERGGSIIFDGAPDAIRSTGTLTGEYLGGRRHVADAAHWSRRAVDA
STPRIVLEGASEHNLRDVTVEIPLQRLVCVTGVSGSGKSTLLQDVLYPAMARHFGLATEA
PGAFKSLKGADQVTDVVFVDQSPIGKTARSNPASYVGAFDEIRKLFAKAPLAQQRGYGPG
MFSFNSGDGRCPTCGGSGFEHIEMQFLSDVYLRCPDCDGRRYRAEILEVKIERGEPARAL
SIADVLELTVSEAAAYFATDAEVLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGF
LAESAQARTTRGAKQVVAKRLFMFDEPTTGLHFDDIAKLMQAFGKLLASGHSLIVIEHNL
DVIRAADWIIDLGPEGGDGGGRVLCAGAPDEVKACAESHTGEALLQYDRAMGLAAEAEPP
GIPLQKALSAARARRAIEGEDVVRIVNAREHNLKALDVDIPHGKFNVITGVSGSGKSTLA
FDILFHEGQRRYLESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATT
SEVWHFLRLLYVKLGLQHCIHDGTPVTSQSAESIAAQLLRDHKGQHVGFLAPLVVNRKGV
YTDLAKWAKARGNTHLRVDGEFVPVDPWPKLDRFREHTIELPVADLVISADHEAELREAL
DQTLDIGKGIMHLLAPLDGLHDAINGGKSTAKLGDVKVLSTKRACPVCGTSYPELDPRMF
SYNSKHGWCTSCVGTGLSLTREQRAAYDDTIVVDDNRGREQSLPSEEQEPEGLVDEPCPD
CAGTRLNPVARAVTFDSQAIVDVAQWTVSDTRAWIDTLQMTGRDAEIARDVVSEIGSRLQ
FLEEVGLGYLSLDRAAPSLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLHPRDNQILL
NALRKLGDKGNTLVVVEHDEDTIRRADHIIDIGPGAGKRGGTLIAQGSVADLSAQADSLT
GRFLAQPIVHPLQPRREVVAPGKRAAAVPENWLTVHGGKLHNLRDVTVGIPLARLVAVTG
VSGSGKSTLARDVLMTNLLDAVGRSVLSSPATRRARAAAEEKPAANRRSSVLARSAPRAP
LNVTHTWQGCDSVTGWENIDRVLEVDQTPIGKTPRSCPATYIGVWDAIRKLFAGTLEARA
RGYTASRFSFNTGEGRCPACEGQGVRTIGMSFLPDVKVPCDVCHGQRFNPETLAVTWRGK
NIGDVLTMEIDEAVEFFASITNIGHPLQLMKDVGLGYLTLGQPSPTLSGGEAQRIKLVTE
LSKVRDDLTRRGQKPPHTLYVLDEPTVGLHMADVAKLIRVLHRLVDGGHSVVVIEHDLDV
IAEADWIIDLGPEGGVGGGTIVAATDPESLSRVAASHTGAALRPVLARTAATATLAGEGT
NG
NT seq
5949 nt
NT seq
+upstream
nt +downstream
nt
ttgtcctccaacgacgcaacccctgacaccctcgccgatactccccaagccggcaagccg
agcagcaacaagacccagggcacgatccgcattcgcggcgcccgccagcacaacctgaaa
aacgtcgacctcgacgtgcgcaccggcgaaatgacggtcgtcaccgggccgtcaggctcg
ggcaagtcgagcctcgtgttcgacacgctgtatgcggaaggccagcgccgctacgtcgaa
accttcagtgcctacgcgcgccagttcctcgaccggatggatcggccgcaggtcgaccgc
gtcgacggcgtaccgcccgccatcgcgatcgaccagaccaacccggtgcgcagctcgcgc
tccacggtcggcacgatgaccgagctcaacgaccatctgaagctgctgtacgcgcgtgcg
gccgaactgttcgaccgccagaccgcgcatccggtgcggcacgacacgccggagacgatc
tacgcggaactgctcgaacgcaccgcgcaggaggagccgcggctcgtcgtcacgttcccg
gtcgagctgccggaatcggcttccgagcaggaggtcgagcagtggctgtcggcgagtggc
tatacgcgtgttcaggcgcagcgcgaagtcgattcaccgaccggcaagcgcaagctgctc
gacgtcgtcgccgaccgcttccggctgcgttcggtcgataaagcgcgcgcgatcgaggcg
atcgaggcatcgctgaagcgcggcggcggccgggtgaatatctacgtcctgccggccacc
tcggacgaaccgcagaccgcagccgccgagccgcgcatctggcgtttttccaccggcctg
cacagccccgaaagcgatctgcgctatgccgatccgcagcccgcgctgttctcgttcaac
tcggcctatggcgcgtgcgatgcctgccgcggcttcggccgcgtgatcggcgtcgacctc
ggtctggtaattccagatgcgcgcaagacgctgcgcgaaggcgcggtcaagccgatgcag
acgcccgcgtggaaggaatgccaggacgacctgatgcgctacgcggcgaaagccgacatc
cgtcgcgacacgccgtggggcgagctcagcgagcgcgaacgcaactgggtcatcaacggc
tcgccggactggaacggcaagtggcagacgcattggtacggcgtcaaacgcttcttcgac
tatctcgaatcgaaggcgtacaagatgcatatccgcgtgctgctgtcgaagtaccgcagc
tatacgccatgcgaaacctgcggcggcgcgcgtctgaaaaccgaatcgctgctgtggcgt
ctcggcagcaacgcgaacgcgaacgacgtgctcgcgcccgagcaccgcttcatgccgcgc
ggcgtgcagtggtcgcgcgcgcagctcgaagcgttgcccggtcttaccgtgcacgatctg
atgctgatgccgatcgagcgcatccgccgcttcttcgacgacatcacgctgccgagcgcg
ttgctcgacgacgcgctgaagctgctgctcgccgaggtgcgcacgcgcctcaaatatctc
tgcgacgtcggcctcggctatctgacgctcgatcggcaaagccgcacgctgtcgggtggc
gaggtgcagcgcatcaacctgaccaccgcgctcggcacgtcgctgaccaaaacgctgttc
gtgctcgatgagccgagcatcggcctgcatccgcgcgacctgaaccgcatcgtcgaggcg
atgcaccggctgcgcgacgcgggtaatacgctggtcgtggtcgagcatgatccgtcagtg
atgctcgcggcggaccggctcatcgacatgggtccagggccaggcgagcgcggcggttcg
atcatattcgacggcgcgcccgatgcgatccgctcgaccggcacgctgaccggtgaatat
ctcggcggccggcgccatgtcgcggatgccgcgcactggtcgcgtcgcgcggtcgatgcg
agcacgccgcgcatcgtgctcgaaggcgcgagcgagcacaatctgcgcgacgtcacggtg
gaaattccgttgcagcggctcgtctgcgtgaccggcgtgtcgggttccggcaaatcgacg
ctgctgcaagacgtgctgtatccggcgatggcgcgccacttcggccttgccaccgaagcg
ccgggtgcgttcaagtcgcttaagggcgccgaccaggtcaccgacgtcgtgttcgtcgac
cagtcgccgatcggcaagaccgcgcgctcgaatccggccagctacgtcggcgcgttcgac
gaaatccgcaagctgttcgcgaaggcgccgctcgcgcagcagcgcggctacggccccggc
atgttcagcttcaactcgggcgacggccgctgcccgacttgcggcggctcgggcttcgag
cacatcgaaatgcagttcctctccgacgtgtatctgcgctgccccgattgcgacgggcgt
cgttatcgcgcggaaatcctcgaggtgaagatcgagcgaggcgagcccgcgcgcgcgttg
agtatcgccgacgtgctcgagctgaccgtcagcgaggctgccgcgtacttcgccacggac
gccgaagtattgcgcgttctccagccgatcgtcgacgtcggactcgaatacgtgaagctc
gggcagccggtgccgacgctgtcgggtggcgaggcgcagcggctcaagctcgcgggtttt
ctcgcggaatcggcgcaagcgcgtaccacgcgtggcgcgaagcaggtagtcgcgaagcgt
ctgttcatgttcgacgaaccgaccacgggcctgcatttcgacgacatcgccaagctgatg
caggcgttcggcaagctgctcgcgagcggtcactcgctgatcgtgatcgagcacaacctc
gacgtgatccgcgcggccgactggatcatcgacctcggtcccgaaggcggcgacggcggt
ggccgcgtgttgtgcgcgggcgcgccggacgaagtgaaagcgtgtgccgagtcgcatacc
ggcgaggcgttgctgcaatacgaccgcgcgatgggcctcgcagccgaagcggagccgcca
ggcatcccgctgcagaaggcactgagcgcagcccgcgcgcgtcgcgcgatcgaaggcgag
gacgtcgtgcgcatcgtcaacgcgcgcgagcacaacctgaaggcgctcgacgtcgacatt
ccgcacggcaagttcaacgtgatcaccggcgtgtcgggctcgggcaaatcgacgctcgcg
ttcgacatcctgttccacgaaggtcagcggcgctacctcgaatcattgaatgcgtacgcg
cgctcgatcgtgcagccggccgggcgacccgaagtcgacgcggtgtacggcattccgcct
accgtcgcgatcgagcagcggctgtcgcgcggcggccgcaagagtaccgtcgcgacgacc
tcggaggtgtggcacttcctgcgtctgctgtacgtgaagctcggcttgcagcattgcatt
cacgacggcacgccggtcacgtcgcaaagcgccgaatcgattgccgcgcagttgctgcgc
gatcacaagggccagcatgtcggcttcctcgcgccgctcgtcgtgaaccgcaagggcgtc
tataccgacctcgcgaaatgggcgaaagcgcgcggcaatacgcatctgcgggtggacggc
gagttcgtgccggtcgatccctggccgaagctcgaccgcttccgcgagcacacgatcgaa
ctgccggtcgccgacctcgtcatctcggccgatcatgaagccgaactgcgcgaagcgctc
gatcagacgctcgacatcggcaaaggcatcatgcatttgctcgcgccgctcgacggcttg
cacgacgcgatcaacggcggcaagtccaccgcgaagctcggcgacgtgaaggtgctgtcg
acgaagcgcgcgtgtccggtgtgcggcaccagctatcccgagctcgatccgcgcatgttc
tcgtacaacagcaagcatggctggtgcacgagctgcgtcggcacggggctgtcgctgacg
cgcgagcagcgcgccgcgtacgacgacacgatcgtcgtcgatgacaatcgcggccgcgaa
cagagcttgccgtcggaagagcaggaaccggaagggctcgtcgacgagccgtgtccggat
tgcgcgggcacacgtctgaatccggtcgcgcgtgccgtcacgttcgactcgcaggcgatc
gtcgatgtcgcgcaatggaccgtgtccgacacgcgcgcatggatcgatacgctgcagatg
acaggccgcgatgccgaaatcgcacgcgacgtggtcagtgaaatcggcagccggctgcag
ttcctcgaagaagtcgggctcggctatctgagcctcgatcgcgcggcgccgagtttgtcg
ggcggcgaagcgcagcgcatccggctcgccgcgcagctcggcagcaatctgcaaggtgtg
tgctatgtgctcgacgagccgaccatcggtctgcatccgcgcgacaaccagatcctgctg
aacgcgctgcgcaagctcggcgacaagggcaatacgctagtcgtcgtcgagcatgatgag
gacacgatccggcgcgccgatcacatcatcgatatcgggcctggcgcaggcaaacgcggc
ggtacgctgatcgcgcagggcagcgtcgccgacctgtcggcgcaggccgattcgctgacc
gggcgctttctcgcgcagccgatcgtgcatccgctgcagccgcgtcgcgaggtcgtcgcg
ccgggcaagcgtgcggctgccgttcccgagaactggctgaccgtgcatggcggcaagctg
cacaacctgcgtgacgtgacggtcggcattccgctcgcgcggctcgtcgcggtgacgggc
gtcagcggctcgggcaagtcgacgctcgcgcgcgacgtgctgatgaccaatctgctcgat
gcggtcgggcgctcggtgctgtcgtcgccggccacgcggcgtgcgcgggcggccgccgaa
gagaaaccggccgcgaaccggcgctcgagcgtgctcgcgcgttcggcgccgcgtgcgccg
ctgaacgtcacgcacacgtggcagggctgcgattcggtcaccggctgggaaaacatcgac
cgcgtgctcgaagtcgatcagacgccgatcggcaagacgccgcgttcgtgtcccgccacc
tacatcggcgtgtgggatgcgatccgcaagctgttcgcgggcacgctggaggcacgtgcg
cgcggctatacggcgtcgcgtttctcgttcaataccggcgagggccgctgccccgcatgc
gagggccaaggcgtacgcacgatcggcatgagcttcctgcccgacgtgaaagtgccatgc
gacgtttgccacggtcagcgcttcaatccggagacgctcgcggtcacgtggcgcggcaag
aacatcggcgacgtgctgacgatggaaatcgacgaagcggtcgagttcttcgcgtcgatc
acgaacatcgggcatccgctgcaactgatgaaagatgtcgggctcggctatctgacgctc
ggccagccatcgccgacgctgtcgggcggcgaggcgcagcgcatcaagctcgtcaccgag
ctgagcaaggtgcgcgacgacctcactcggcgcggccagaagccgccgcacacgctatat
gtgctcgacgagccgacggtcggcctgcacatggcggacgtcgcgaagctgatccgcgtg
ctgcatcggctcgtggatggcgggcatagcgtggtcgtcatcgagcacgatctcgacgtg
atcgccgaggcggactggatcatcgatctcggtccggagggcggcgtgggcggcggtacg
atcgttgcggcaaccgatccggaaagcctgtcgcgcgtggccgcgagtcacacgggcgcg
gctttgcggccggtgctcgcgcgcacggccgcaacggcaacgctggccggcgaaggaacg
aatggctga
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integrated database retrieval system
