Paraburkholderia atlantica CCGE1002: BC1002_1170
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Entry
BC1002_1170 CDS
T01217
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
bge
Paraburkholderia atlantica CCGE1002
Pathway
bge03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BC1002_1170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bge03400
]
BC1002_1170
Enzymes [BR:
bge01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BC1002_1170
DNA repair and recombination proteins [BR:
bge03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BC1002_1170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
Herpes_TK
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ADG15255
UniProt:
D5W6W0
LinkDB
All DBs
Position
1:1305866..1309597
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AA seq
1243 aa
AA seq
DB search
MSEALRHQNLVADELDVFACPLDGVNQIEASAGTGKTWNICALYVRLLLEKNLNADQILV
VTFTKAATAELHERIRGRLAELHRAIEMDDDAGDPFIRRLFETTLAPDNGIEREAALKVV
RRALRTFDQAAIHTIHAFCQRALQEAPFAAAMPFAFDMEADDAALRFELAADFWREQVEP
VAHAHPAFAAWLVARRAGPASLDEQLARRLKKPLAQLRWGSVHADGVDTDSQAGFDVACA
IWQAERDAIVALLAEAQERLSKTTHKPDHVSAAIAAWTDYFARGDCHAPPPRAALKLTAS
ALKKATKARFEPPAHPFFEHADALAAAVVAAEAAQRARWLGLVQTWLDFAPAELVTRKRT
RRVVSFDDLLANLYRALAAHPWLADALRSRYPAALIDEFQDTDPLQFAIFSRIFAPAGPL
FLVGDPKQAIYSFRAADLHTYLAARESASACYTLAVNQRSTAPIVDACNRIFEANPQAFV
LDGLDYQPVRAGERRRAPFADPDASGGDFRIWTLPRGETALSKRDAQRAASEACAAEIVR
LLRGAREGVVTIGDKPLAPGDIAVLVQTHKQGSLVKRVLAAWGVGSVELAQASVFATLDA
EQIERVLAAIDTPGDLRRLRAALATDWLGLDAAALWRLTQVADAPAAETGGVADSTSALD
PADAMGWVERFSRYRMLWHERGFAVMWRTLMRELRVAQRLVAGVDGERRLTNVNHLAELV
QTRAATQPGIAPTLRWLAAQREQGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPF
LNDGGLREPPSSGLPDAREYHDDSGDAVLHYGCDEQEAERASRYAVREQAAERARLVYVA
LTRAVYRCYLVAGTYLSSRSTKESRRSVLNWLVGGSGHTFDAWLAEPPDEAALAASWHAL
AGGPVTLRALPEVTRRVPLETLQDHGAHLRARANRRALRDQWRMASFSGLIAAGSRSADA
HAHAPQEDLRPDHDEIADALQSAPLLVPLAATNAPAHADDDILAFPRGAAAGDCLHRMFE
LADFSDARSWPDAIRGALRERPAPAAPELAARLPAMMHRLIADVVSTELVPGMTLARLDP
RRRLNELEFLFAAPSLDFPALRELLIEYGYPDVALEPGVLRGYVKGFIDMIVEHDGRFWI
VDWKSNHLGDTAADYAAAPLEAAMASHAYHLQALLYTVALHRYLKTRVRDYAYDTHIGGY
LYLFVRGVRPDWRDVDGAAGVHRRRAPFELVALLDAAMIGGGA
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagcgctgcgccatcaaaacctcgtcgccgacgagctcgacgtgttcgcgtgt
ccgctcgacggcgtgaaccagatcgaagcgtcggcgggcaccggcaagacgtggaatatc
tgcgcgctgtacgtgcggctgctgctcgaaaagaacctgaacgcggatcagattctggtc
gtcacgttcacgaaggccgcgaccgcggagttgcacgaacgcattcgcggccgtctcgcg
gaattgcatcgcgcgatcgagatggacgacgacgccggcgatccgttcatccgccggctg
ttcgaaacgacgctcgcgcctgacaacggtatcgagcgcgaggcggcgttgaaggtcgtg
cgccgcgcgctgcgcaccttcgatcaggccgcgatccacacgatccacgcgttctgtcag
cgcgcgttgcaggaagcgccgttcgccgccgcgatgccgttcgcattcgacatggaagcc
gacgacgcggcgctgcgcttcgaactcgccgccgacttctggcgcgagcaggtcgagccc
gtcgcgcatgcgcatccggcgttcgccgcgtggctggtagcgaggcgcgccggtccggcg
tcgctcgacgagcagttggcgcgacgtctgaaaaagccgctcgcgcaattgcgctggggc
agcgttcacgcggacggcgtcgacaccgattcgcaggccggcttcgatgtcgcgtgcgcg
atctggcaggccgagcgcgacgcgatcgtcgcgctgctcgccgaagcgcaggagcgcctg
agcaagaccacacacaagcccgatcacgttagcgccgcgatcgccgcgtggaccgactac
ttcgcgcggggcgactgccatgcgccgccgccgcgcgccgcgttgaagctgaccgcgtcg
gcgttgaagaaggcgaccaaggccaggttcgagccgccggcgcatccgttcttcgagcac
gccgacgcgttggccgcggccgtggtcgctgccgaggccgcgcagcgcgcgcgctggctc
gggctcgtgcagacgtggctcgacttcgcgccggccgagctggtgacgcgcaagcgcacg
cgccgcgtcgtgtcgttcgacgatctgctcgcgaatctgtatcgcgcgctggccgcgcat
ccgtggctcgccgatgcattgcgcagccgctatccggccgcgctgatcgacgagtttcag
gacaccgatccgttgcaattcgccatcttcagccgcatcttcgcgccggccgggccgctg
ttcctcgtcggtgatccgaagcaggcgatctacagtttccgtgcggcggacctgcatacg
taccttgcggcgcgcgagtcggcgtccgcgtgctacacgctcgcggtcaaccaacgctcg
accgcaccgatcgtcgatgcgtgcaaccggatcttcgaagcgaacccgcaggcgttcgtg
ctcgacgggctcgactatcagccagtgcgtgcgggcgagcggcggcgcgcaccgttcgcc
gatcccgacgcgagcggcggcgatttccgcatctggacgttgccgcgcggcgagaccgcg
ctgagcaaacgcgacgcgcagcgcgcggcgagcgaagcgtgcgcggccgagatcgtgcgg
ctgttgcgaggggcgcgtgaaggcgtggtgacgatcggcgacaagccgctcgcgccgggc
gatatcgcagtgctcgtgcagacgcacaagcagggcagcctcgtcaaacgcgtgctcgcg
gcgtggggcgtcggcagtgtggagcttgcgcaggcgtcggtgttcgcgacgcttgacgcc
gagcagatcgagcgtgtgctggccgccatcgatacgcccggcgatctgcgccgtctacgc
gccgcgctcgccaccgactggctcgggctcgatgccgccgcgctgtggcgccttacgcag
gtcgccgatgcgccggcggccgaaaccggaggcgtggctgattcaacgtccgcactcgat
cccgccgacgcgatgggctgggtcgaacgtttttcacgctaccggatgctgtggcacgaa
cgcggcttcgccgtgatgtggcgcacgctgatgcgcgagctgcgcgtcgcgcagcggctc
gtcgcgggtgtcgacggcgagcgccggctgaccaacgtgaatcatctcgccgagctcgtg
caaacacgcgcggccacccagcccggcatcgcgccgaccctgcgctggctcgccgcacag
cgcgagcagggcggcggggaagaggcgcaactgcggctcgagtcggatcgcaatctggtg
cagatcgtcacggtccataaatcgaagggactcgaatacgcggtcgtgttctgtccgttc
ctgaacgatggtggcttgcgcgagccgccgtcatcaggcttgcccgatgcgcgcgagtat
cacgacgacagcggcgatgcggtgctgcactacggttgcgacgaacaggaagccgagcgc
gcgtcgcgctacgcggtgcgcgagcaggcggcggaacgcgcgcggctcgtctatgtggcg
ctcacgcgcgcggtgtatcgctgctacctggtcgcgggcacctatctgtcgtcgcgctcg
accaaagagtcgcgccgcagcgtgctgaactggctcgtcggcggcagcgggcacacgttc
gacgcatggctcgccgagccgcccgacgaagccgcgctcgcggcgagctggcatgcgctc
gcgggcgggccggtcacgttgcgggcgctgcccgaagtgacgcggcgcgtgccgctcgaa
actctgcaggatcacggcgcgcatctgcgcgcgcgcgcgaatcggcgggcgttgcgcgat
cagtggcgcatggcgagtttcagcggcctgatcgcggccggcagcaggagcgcggatgcg
cacgcgcacgcgccgcaggaagacttgcggcccgatcacgatgagattgccgatgcgcta
cagtccgcgccgttgctcgtgccgctcgccgcgaccaacgccccggcgcatgccgacgac
gacatcctcgcgttcccgcgcggtgcggcggctggcgattgcctgcatcggatgttcgag
cttgccgatttcagcgacgcgcgcagctggcccgacgcgatccgcggcgcgctgcgcgag
cgaccggcgccggccgcgcccgagctcgccgcgcgcttgcccgcgatgatgcatcggctg
atcgccgacgtggtctcgaccgaactggtgcccggcatgacgctcgcgcggctcgatccg
cgtcggcgcctgaacgaactcgagtttctgttcgcggcgccgtcgctggattttccggcg
ctgcgcgagctgctgatcgaatacggctaccccgacgtcgcgctcgagcccggcgtgctg
cgcgggtacgtcaaaggatttatcgacatgatcgtcgagcacgacggccgcttctggatc
gtcgactggaaatcgaaccatctcggcgacaccgccgccgactacgcggccgcaccgctc
gaggcagcgatggcgagtcacgcgtatcacctgcaggcgctgctttatacggtcgcgttg
catcgctatctgaagacgcgcgtgcgcgattacgcgtacgacacacatatcggcggctat
ctgtatctgttcgtgcgcggcgtgcggccggattggcgcgatgtcgacggcgccgccggc
gtgcataggcggcgcgcgccgttcgaactggtggcgctgctcgacgcggcgatgatcgga
ggtggcgcatga
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