Paraburkholderia atlantica CCGE1002: BC1002_1280
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Entry
BC1002_1280 CDS
T01217
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bge
Paraburkholderia atlantica CCGE1002
Pathway
bge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BC1002_1280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bge03019
]
BC1002_1280
03016 Transfer RNA biogenesis [BR:
bge03016
]
BC1002_1280
Enzymes [BR:
bge01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BC1002_1280
Messenger RNA biogenesis [BR:
bge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BC1002_1280
Transfer RNA biogenesis [BR:
bge03016
]
Prokaryotic type
tRNA degradation factors
BC1002_1280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
PF0610-like_N
WHD_RNase_R
RcsD_ABL
Motif
Other DBs
NCBI-ProteinID:
ADG15360
UniProt:
D5W7G5
LinkDB
All DBs
Position
1:1435335..1437830
Genome browser
AA seq
831 aa
AA seq
DB search
MQREKIIDKPLSKFPYPIPSREEILGVLRTSETPLAANDIAEALSIKRQEREGFFKRLGA
MERDGQIRLDQRNLYQLTHPSNFVAGRVQGHRDGYGFLIRDDGQDDLFLPNGEMQKVMHN
DRVLARIVGYDRRGRPEGHIVEVTDRANKRVIGRLLNENGALIVAPEDKRIGHDILITQN
TRKAKVGQVVVVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFSEAAL
GEAAKLPDEVRPADIRHRVDLRDVPLVTIDGEDARDFDDAVYCEPVKVGRGDGFRLIVAI
ADVSHYVLPQSGLDTDAIERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLVCDMIV
TARGDVKAYQFYPGVMHSAARLTYTEVAAVLKNTKGPEATRRAALLPQLQNLYGVYKALF
AARQKRGAIDFDTTETYIVCNAQGKIEQIVPRTRNDAHKLIEECMLAANVCAADFLKRNK
HPGLFRVHAGPSAEKLENLRTFLRGMGLTLGGGDTPHASDYAALMAQIRDRPDASMLQTM
LLRSMQQAVYSPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILQGRKYQPQPPHG
VELNTALSPRARAMQQADEEKRGARARANNVAIWEELGLHCSANERRADEASRDVEAWLK
CYFMRDKLGEEYGGMVNGVTSFGIFVQLDSLFIEGLVHVTELGSDYFQYDEIRNELRGER
TGIRYRLSDRVRVQVSRVDLDARKIDFRLVRDTPIKPPAARGIAADKGEGAGPRVRTLSS
VEGGASVPGQRRKKAAPAQSVAVKEARAARGAARKHGVASKAASKQARKKR
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgagaaaaaatcatcgacaagcccttgagcaaatttccgtatccgattccaagc
cgcgaagaaatcctcggcgtgctgcgcacgagtgaaacgccgcttgccgcgaacgacatc
gccgaagccctgtcgatcaagcgccaggagcgcgaaggatttttcaagcgtctcggcgcg
atggagcgcgacggccagatccggctcgaccagcgcaacctctatcaactcacccatccg
tcgaacttcgtcgcgggccgcgtgcagggccatcgcgacggttacggtttcctgattcgc
gacgacggccaggacgacctgttcctccccaacggcgagatgcagaaggtcatgcacaat
gaccgcgtgctcgcgcgcatcgtcggctatgaccggcgtgggcggcccgaagggcatatc
gtcgaggtcacggaccgcgcgaacaagcgcgtgatcgggcgtctgctcaacgagaacggc
gcgctgatcgtcgcgcccgaagacaagcgcatcggccacgacatcctgatcacgcagaac
acccgcaaggcgaaggtcggccaggtcgtggtggtcgagctgaccgatttcccgagccgt
cattcgcagccgctcggccgcgtggtcgaagtgctcggcgatatcgacgaccccggcatg
gaaatcgaaatcgcggtgcgcaagtacggcgtgccgcacgaattcagcgaggccgcgctc
ggcgaagcggccaagctgcccgacgaagtgcgcccggccgatatccgccatcgcgtcgat
ctgcgcgacgtgccgctcgtcacgatcgacggcgaggacgcgcgcgacttcgacgacgcc
gtctattgcgagccggtcaaggtgggccgcggcgacggcttccgcctgatcgtcgcgatc
gcggacgtgtcgcattacgtgcttccgcaaagcgggctcgacaccgatgcgatcgagcgc
agcacgtcggtgtacttcccgcgccgcgtgatcccgatgctgccggagaagctgtcgaac
ggactgtgctcgctgaacccgcaagtcgaccgctgcgtgctcgtgtgcgacatgatcgtc
accgcgcgtggcgacgtgaaggcgtatcagttctatccgggcgtcatgcattcggccgcg
cggctcacctacaccgaagtcgccgcggtgctgaaaaacaccaagggtcccgaagcgacc
cgccgtgccgcgttgctgccgcaactgcagaatctgtatggcgtctacaaggcgctgttc
gcggcgcgccagaagcgcggcgcgatcgacttcgatacgacggagacgtacatcgtctgc
aacgcgcagggcaagatcgagcagatcgttccgcgcacgcgcaacgacgcgcacaagctg
atcgaggaatgcatgctggccgccaacgtgtgcgcggcggatttcctcaagcgcaacaag
catccgggcctgttccgtgtgcatgcgggcccgagcgcggagaagctcgagaacctgcgc
acgttcctgcgcggcatgggcctgacgctcggcggcggcgacacgccgcacgcgagcgac
tacgccgcactgatggcgcagatccgcgaccggcccgacgcgtcgatgctgcagacgatg
ctgctgcgctcgatgcagcaggccgtctacagtcccgacaacatcggccacttcggtctc
gcctatgaggcctacgcgcacttcacgagcccgattcgtcgctatccggacctgctcacg
catcgcgcgatctacgcgatcctgcagggccgcaagtatcagccgcagccgccgcacggc
gtcgagctcaataccgcgctgtcgccgcgcgcccgcgcaatgcagcaggccgacgaggaa
aagcgcggcgcccgtgctcgcgcgaacaacgtggcgatctgggaagagctcgggctgcac
tgctcggccaacgagcgccgcgcggacgaagcatcgcgcgacgtcgaagcgtggctcaag
tgctatttcatgcgcgacaaactcggcgaagagtatggcggcatggtcaacggcgtcacg
tcgtttggcattttcgtgcagctcgattcgctgttcatcgaaggtctcgtgcatgtgact
gaactcggctcggactacttccagtacgacgagatcaggaacgaactgcgcggcgagcgc
accggcattcgctaccggctgtcggatcgcgtgcgcgtgcaagtgagccgcgtcgatctc
gacgcgcgcaagatcgacttccgcctcgtgcgcgatacgccgatcaagccgccggcggca
cgcggcatcgccgcggacaagggtgaaggcgctggcccgcgcgtgcgcacgttgtcgtca
gtggaaggcggtgcctcggtgcccggtcagcggcgcaagaaggccgcgcccgcgcagagc
gtggcggtcaaggaagcgcgcgcggcgcgcggcgcggcgaggaagcatggcgtcgcgagc
aaggcggcgtcgaagcaggcacgcaagaagcgctga
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