Paraburkholderia atlantica CCGE1002: BC1002_2154
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Entry
BC1002_2154 CDS
T01217
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bge
Paraburkholderia atlantica CCGE1002
Pathway
bge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BC1002_2154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bge03019
]
BC1002_2154
03009 Ribosome biogenesis [BR:
bge03009
]
BC1002_2154
Enzymes [BR:
bge01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BC1002_2154
Messenger RNA biogenesis [BR:
bge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BC1002_2154
Ribosome biogenesis [BR:
bge03009
]
Prokaryotic type
rRNA processing factors
BC1002_2154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ADG16213
UniProt:
D5WAD3
LinkDB
All DBs
Position
1:2413442..2416642
Genome browser
AA seq
1066 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFRDGVDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEAASQSGTAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAEEVKPKQEAAVKGITPEK
PAPSAPVRPAATPAPVAVTPASGGFIGWLKNLFGMQPAAPAPAAPATTDKQARPQRGERT
ERGERTGERGADRNRNRRGGAGGRDVAARGEGMTGGRQAQAQQPSQRREEREGREAREGR
EPRAPREQREPREAREPREAREPREARERGAERAEAAEGTARAERQERGERRERGERAER
VERGERRKPQAEAAAALTQTDTQAADELARNRAAAGENGVPVDQEAVARDGEERRRRRRG
RRGGRREREEDVNGNLAADVAEGEGDNVAASDEAPVRTQQPVEHTPAASEAKDVTPVEVV
VAAVATQSAVVTELHAAAETPALAAENAAKTEKVVPVEQAPVAAQPAIETPAQAEQAAPA
ASEPVAPVAPIEPAAHSESPAVEPALEVQPTFPTEPQATPAALETAAPATIVEAPAAVPA
PQAEIVEPQPVVAPEPAVAEPAPVAAAPQPAPVRSAAPAAASADALQPILEQAGLIWVNT
DADKLRAAQEAAAQTVKPPRVVRERKALPPVDSTPMQQVETIKHPQ
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaatgttgttcaatgcgacgcagcaggaagagctgcgcgtcgccatcgtcgat
gggcaaaaactcatcgatatcgacatcgaaaccgccggccgcgaacagcgcaaaggcaat
atttacaagggcatcatcacgcgcatcgagccgtcgctcgaggcctgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttccgggac
ggcgtcgacatgcgttccgcacgcattcaggacgcgctgaaggaaggtcaggaactgatc
gtccaggtcgaaaaggaagaacgcggcaacaagggcgcagctctgaccacgttcatctcg
ctcgccggccgctatctggtgctgatgccgaacaacccgcgtggcggtggcgtgtcgcgc
cggatcgagggcgacgaccgtcaggaactgcgcgaaaccatggcgcagctgcaactgccg
gaaggcatgagcatcatcgcgcgcacggccggcatcggccgcagcgccgaagagctgcaa
tgggacctgaactacctgatgcaactgtggcgcgcaatcgaagccgcgtcgcaaagcggc
acggccggccagccgatgctgatctatctcgaatcgagcctcgtgatccgcgcgattcgc
gactacttccagcccgatatcggcgaaatcctgatcgacaccaccgaaatccatgaccag
gcgcgcgccttcatggacatcgtgatgccggacaacgtcggcaaggtgaagcgctaccac
gacgacgtgccgctattctcgcgcttccagatcgagcaccagatcgaaaccgcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaagcgctcgtc
gcaatcgacgtgaactcggcgcgcgccaccaagggcgccgacatcgaggaaacggccgcg
cgcacgaacctcgaagccgcggacgaagtcgctcgccagctgcgtctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggaatcggccaagagccagcgcgaagtcgag
cagcgtctgaaggacgcgctgaagcacgaccgcgcccgcgtccagatgggcaagatttcg
cgcttcggcctgatggagctgtcgcgccagcgtctgcgcccggcgctgtcagaaggcagc
cacgtcacgtgcccacgttgtaacggcacgggtcacatccgcgatacggaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaagtgaccgccttcctgttgaacgagaaacgcgccgaaatcaac
aagatcgagtcgcgtttcaaggtcaatgtcgtgctgatccccaacaagcaccttgatacg
ccgcactacaagctcgagcgtctgcgtcacgacgacgcgcgcctcgacgatccgcgcgca
tcgtggaagatggccgaagaagcggcccgcgagctcgaatcggaaaccggctacagcaag
cgcgccgaggaagtgaagccgaagcaggaagcggcggtcaagggcatcacgcccgagaag
ccggctccgagcgcgccggtacgcccggcggctacccccgctccggtcgcggtgacgccg
gccagcggcggtttcatcggctggctgaaaaatctgttcggcatgcagccggctgctccg
gcacctgccgcgccagccacgaccgacaagcaagcccgtccgcaacgcggtgaacgcacc
gagcgcggtgagcgcacgggcgagcgcggcgccgatcgcaaccgcaatcgccgtggcggc
gcaggtggccgcgacgtggcagcgcgtggcgaaggcatgaccggcggccgtcaggcgcaa
gctcagcagccgtcgcagcgtcgcgaggaacgcgaaggccgcgaggcacgcgagggccgt
gaaccgcgcgcgccgcgtgagcaacgcgaaccgcgtgaggctcgggagccgcgtgaagca
cgcgaaccgcgcgaggctcgcgaacgcggcgccgagcgcgccgaagccgccgaaggcacg
gcacgcgccgaacgtcaggaacgcggcgagcgccgcgagcgtggcgaacgcgctgaacgc
gtcgaacgtggcgagcgtcgcaagccgcaggcggaagccgccgcagcgctgacgcaaacc
gacacccaagccgccgacgaactcgcgcgcaaccgcgccgcagccggtgaaaacggcgtg
ccggtcgatcaggaagcggtcgcgcgtgacggtgaagagcgtcgtcgtcgccgtcgcggc
cgtcgcggtggtcgtcgcgagcgtgaagaggacgtgaatggcaacctcgcggcggacgtc
gcggaaggagaaggtgacaacgttgccgccagcgacgaagcgccggtgcgtacccagcag
ccggtcgagcacacgcccgcagccagcgaagcgaaggacgtgaccccggtcgaagtggtg
gtcgccgctgtcgcaacgcaaagcgccgtcgtgaccgaactgcatgcggcagccgaaacg
ccggctctcgccgcggaaaatgccgcgaagaccgaaaaggtcgtgccggtcgaacaagct
ccggtggcggcgcaaccggctatcgaaacgccggcgcaagcagagcaagccgcgccggcc
gcgagcgaaccggtggcgccggttgccccgatcgaaccggccgcgcattccgaatcgccg
gcagtcgagccggcactggaagtccagccgaccttcccgaccgagccgcaagctaccccg
gctgcgctcgaaaccgcggctccggccacgatcgtcgaggcaccggcagccgtgccggca
ccgcaggccgagatcgtcgagccgcaaccggtcgtcgcaccggaaccggccgtagccgaa
ccggcgcccgtcgccgcggccccgcagccggctcccgtccgcagcgcagcgcccgccgct
gcatcggccgatgcattgcagccgatcctcgagcaagcgggcttgatctgggtgaacacc
gacgccgacaaactgcgtgccgcgcaggaagcggcggcgcagacggtcaagccgccgcgc
gtcgtccgtgagcgcaaggcgctgccgccggtcgacagcacgccgatgcagcaggtcgaa
acgatcaagcatccgcagtaa
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