Paraburkholderia atlantica CCGE1002: BC1002_2903
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Entry
BC1002_2903 CDS
T01217
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bge
Paraburkholderia atlantica CCGE1002
Pathway
bge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BC1002_2903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bge03019
]
BC1002_2903
03400 DNA repair and recombination proteins [BR:
bge03400
]
BC1002_2903
Enzymes [BR:
bge01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BC1002_2903
Messenger RNA biogenesis [BR:
bge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BC1002_2903
DNA repair and recombination proteins [BR:
bge03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BC1002_2903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADG16951
UniProt:
D5W5R0
LinkDB
All DBs
Position
1:complement(3204256..3206103)
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AA seq
615 aa
AA seq
DB search
MSRPLEILNEVFGYPAFRGQQGEIVEHVADGGDCLVLMPTGGGKSLCYQIPSLVRRERGF
GAGIVVSPLIALMQDQVAALTEVGVRAAYLNSTLSSAEAMATERALRDGDIDLLYVAPER
LMTSRFQELLERTRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPNVPRIALTATAD
AITRDEIIHRLALDDARVFVSSFDRPNIRYRIAEKDNARAQLLDFIRAEHTKADGTTDAG
VVYCLSRRKVEETAEWLKEKGMRALPYHAGMEFEVRQKHQEMFQREEGIVMCATIAFGMG
IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSNAWMAYGLGDVVQQRKMIDESEADD
AHKRVQTGKLDALLGLCETAACRRVRLLAYFGETSQPCGNCDNCLEPPPTWDATREAQMA
LSCVFRAQRASGFHFGAGHLIDILRGNRSEKILQRGHEKLTTFGIGAALGEPEWRAIFRQ
LVAFGYLTVDHEGYGSLVLTEASKPVLKGEQKVTMRRYVKPTRTRQSSGRTSERADPTIG
MGPRERARWDRLRMWRTETAKSDGVPAYVIFHDATLAEIARLGPDSIDDLRGIPGMGARK
LDRFGYELLNVVAAD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtccgctcgaaatcctcaacgaagtctttggttatcccgcgttcagaggacag
cagggcgaaattgtcgagcacgtcgccgacggcggcgattgcctcgtgctgatgccgacg
ggcggcggcaagtcgctgtgctatcagattccgtcgctggtacggcgcgaacgcggcttt
ggcgccggcatcgtggtgtcgccgctgatcgcgctgatgcaggatcaggtggccgcgctg
acggaagtcggcgtgcgggccgcgtacctgaactcgacgttgtcgagcgctgaggcgatg
gccaccgagcgggcgctgcgcgacggcgacatcgatctgctctacgtcgcaccggagcgg
ctgatgacgtcgcgcttccaggagctgctcgagcgcacgcggatcggtctcttcgcgatc
gacgaagcgcactgtgtgtcgcaatggggacacgatttccggcccgaatatatccagctg
tcggtgctgcacgagcgttttccgaacgtgccgcgcattgcgctgacggcgaccgccgac
gcgatcacgcgcgacgaaatcattcatcgtctcgcgctcgacgatgcgcgcgtgttcgtg
tcgagtttcgatcggccgaacatccgctatcgcatcgccgaaaaagacaacgcgcgcgcg
cagctgctcgacttcatccgcgccgagcatactaaggccgacggcacaaccgacgcgggc
gttgtctattgcctgtcgcgccgcaaggtcgaggaaaccgcggagtggctcaaggaaaag
ggcatgcgtgcgctgccataccacgccggcatggaattcgaggtgcgccagaagcatcag
gaaatgttccagcgcgaggaaggcatcgtgatgtgcgcgacgattgcgttcggcatgggc
atcgacaagcccgacgtgcggttcgtcgcgcatctggatttgccaaagagcgtcgaaggg
tactaccaggagaccggccgtgcgggccgcgacgggcttccgtcgaacgcgtggatggcc
tacggcctcggcgacgtcgtgcagcagcgcaagatgatcgacgaatccgaagccgatgac
gcgcacaagcgcgtccagaccggcaagctcgacgcgctgctcggtttgtgcgaaacggcg
gcctgccggcgggtgcgcctgctcgcgtacttcggcgaaacaagccaaccatgcggcaac
tgcgacaactgcctcgagccgcccccaacctgggacgcgacacgcgaggctcagatggcg
ctgtcgtgcgtgtttcgcgcgcagcgtgcgagcggcttccatttcggcgccggacatctg
atcgatattttgcgcggaaaccgcagcgagaaaatcttgcagcgcggccatgagaagctg
accacgttcggtattggtgcggcgctcggtgagccggagtggcgtgcgatcttccgccag
ctagtcgcgttcggctacctgacggtcgaccacgagggctacggttcgctcgtgctcacg
gaggcgagcaagccggtgctcaagggcgagcagaaagtgacgatgcggcgctacgtcaag
cccacacgcacgcgtcaatcgtcgggacgcaccagcgagcgcgccgatccgaccatcggt
atgggccctcgcgagcgcgctcgctgggaccgcctacgcatgtggcgcaccgaaaccgcg
aagagcgacggcgtgccggcgtatgtgattttccatgacgcgacgcttgcggaaatcgcc
cgtctcggccccgattctatcgacgatctgcgtgggattccgggcatgggcgcgcgaaaa
ctcgaccgtttcggctacgaattgctgaacgtcgtggcggccgactga
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