KEGG   Paraburkholderia atlantica CCGE1002: BC1002_2903
Entry
BC1002_2903       CDS       T01217                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
bge  Paraburkholderia atlantica CCGE1002
Pathway
bge03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bge00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BC1002_2903
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bge03019]
    BC1002_2903
   03400 DNA repair and recombination proteins [BR:bge03400]
    BC1002_2903
Enzymes [BR:bge01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BC1002_2903
Messenger RNA biogenesis [BR:bge03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BC1002_2903
DNA repair and recombination proteins [BR:bge03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BC1002_2903
SSDB
Motif
Pfam: RQC DEAD HRDC RecQ_Zn_bind Helicase_C ResIII
Other DBs
NCBI-ProteinID: ADG16951
UniProt: D5W5R0
LinkDB
Position
1:complement(3204256..3206103)
AA seq 615 aa
MSRPLEILNEVFGYPAFRGQQGEIVEHVADGGDCLVLMPTGGGKSLCYQIPSLVRRERGF
GAGIVVSPLIALMQDQVAALTEVGVRAAYLNSTLSSAEAMATERALRDGDIDLLYVAPER
LMTSRFQELLERTRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPNVPRIALTATAD
AITRDEIIHRLALDDARVFVSSFDRPNIRYRIAEKDNARAQLLDFIRAEHTKADGTTDAG
VVYCLSRRKVEETAEWLKEKGMRALPYHAGMEFEVRQKHQEMFQREEGIVMCATIAFGMG
IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSNAWMAYGLGDVVQQRKMIDESEADD
AHKRVQTGKLDALLGLCETAACRRVRLLAYFGETSQPCGNCDNCLEPPPTWDATREAQMA
LSCVFRAQRASGFHFGAGHLIDILRGNRSEKILQRGHEKLTTFGIGAALGEPEWRAIFRQ
LVAFGYLTVDHEGYGSLVLTEASKPVLKGEQKVTMRRYVKPTRTRQSSGRTSERADPTIG
MGPRERARWDRLRMWRTETAKSDGVPAYVIFHDATLAEIARLGPDSIDDLRGIPGMGARK
LDRFGYELLNVVAAD
NT seq 1848 nt   +upstreamnt  +downstreamnt
atgtcccgtccgctcgaaatcctcaacgaagtctttggttatcccgcgttcagaggacag
cagggcgaaattgtcgagcacgtcgccgacggcggcgattgcctcgtgctgatgccgacg
ggcggcggcaagtcgctgtgctatcagattccgtcgctggtacggcgcgaacgcggcttt
ggcgccggcatcgtggtgtcgccgctgatcgcgctgatgcaggatcaggtggccgcgctg
acggaagtcggcgtgcgggccgcgtacctgaactcgacgttgtcgagcgctgaggcgatg
gccaccgagcgggcgctgcgcgacggcgacatcgatctgctctacgtcgcaccggagcgg
ctgatgacgtcgcgcttccaggagctgctcgagcgcacgcggatcggtctcttcgcgatc
gacgaagcgcactgtgtgtcgcaatggggacacgatttccggcccgaatatatccagctg
tcggtgctgcacgagcgttttccgaacgtgccgcgcattgcgctgacggcgaccgccgac
gcgatcacgcgcgacgaaatcattcatcgtctcgcgctcgacgatgcgcgcgtgttcgtg
tcgagtttcgatcggccgaacatccgctatcgcatcgccgaaaaagacaacgcgcgcgcg
cagctgctcgacttcatccgcgccgagcatactaaggccgacggcacaaccgacgcgggc
gttgtctattgcctgtcgcgccgcaaggtcgaggaaaccgcggagtggctcaaggaaaag
ggcatgcgtgcgctgccataccacgccggcatggaattcgaggtgcgccagaagcatcag
gaaatgttccagcgcgaggaaggcatcgtgatgtgcgcgacgattgcgttcggcatgggc
atcgacaagcccgacgtgcggttcgtcgcgcatctggatttgccaaagagcgtcgaaggg
tactaccaggagaccggccgtgcgggccgcgacgggcttccgtcgaacgcgtggatggcc
tacggcctcggcgacgtcgtgcagcagcgcaagatgatcgacgaatccgaagccgatgac
gcgcacaagcgcgtccagaccggcaagctcgacgcgctgctcggtttgtgcgaaacggcg
gcctgccggcgggtgcgcctgctcgcgtacttcggcgaaacaagccaaccatgcggcaac
tgcgacaactgcctcgagccgcccccaacctgggacgcgacacgcgaggctcagatggcg
ctgtcgtgcgtgtttcgcgcgcagcgtgcgagcggcttccatttcggcgccggacatctg
atcgatattttgcgcggaaaccgcagcgagaaaatcttgcagcgcggccatgagaagctg
accacgttcggtattggtgcggcgctcggtgagccggagtggcgtgcgatcttccgccag
ctagtcgcgttcggctacctgacggtcgaccacgagggctacggttcgctcgtgctcacg
gaggcgagcaagccggtgctcaagggcgagcagaaagtgacgatgcggcgctacgtcaag
cccacacgcacgcgtcaatcgtcgggacgcaccagcgagcgcgccgatccgaccatcggt
atgggccctcgcgagcgcgctcgctgggaccgcctacgcatgtggcgcaccgaaaccgcg
aagagcgacggcgtgccggcgtatgtgattttccatgacgcgacgcttgcggaaatcgcc
cgtctcggccccgattctatcgacgatctgcgtgggattccgggcatgggcgcgcgaaaa
ctcgaccgtttcggctacgaattgctgaacgtcgtggcggccgactga

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