Paraburkholderia atlantica CCGE1002: BC1002_2904
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Entry
BC1002_2904 CDS
T01217
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bge
Paraburkholderia atlantica CCGE1002
Pathway
bge03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bge00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BC1002_2904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bge03021
]
BC1002_2904
03400 DNA repair and recombination proteins [BR:
bge03400
]
BC1002_2904
Enzymes [BR:
bge01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BC1002_2904
Transcription machinery [BR:
bge03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BC1002_2904
DNA repair and recombination proteins [BR:
bge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BC1002_2904
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
PYNP_C
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
ADG16952
UniProt:
D5W5R1
LinkDB
All DBs
Position
1:complement(3206329..3210567)
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVQQPEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGIRELLRAINIDEQVELLRTELRNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAVNGKGEGLTFTGVSEVLRAYENK
EVELASRVNVRITEMVHNEDKSEGAPAFVPKITLYATTVGRSILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEPVTDRDGNQTR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEEDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADIVNPESQETLFEAGTLLDEDAVEDIERLGIDEVRVRTPLTCETRYGLC
AACYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFTSTMRYVTNAKGEQIVISRSGEAMITDDHGRERERHKVPYGATLLQLDGAQIKAG
TQLATWDPMTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKT
VRPQVKLLDANGEEVKIPNTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGVEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYENVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKSKEL
ADRERFDQIAAEESFEFGTPETPAAEQQHSGE
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgctcgatctattcaagcaagtccaacaacctgaagtttttgacgcgatc
aagatcggcctggcttcgccggacaagatccgttcgtggtcgttcggtgaagtcaagaag
ccggaaaccatcaactaccgcacgtttaagccggagcgcgatggtctgttctgcgcgaag
attttcggtccgatcaaggactacgaatgcctttgcggcaagtacaagcgcctgaagcat
cgtggcgtgatctgcgagaagtgcggcgtcgaagtcacgctcgcgaaggtgcgtcgtgag
cgcatgggccacattgagctggcctcgccggtcgcgcacatctggttcctgaagtcgttg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgtgacatcgagcgcgtgctgtac
ttcgaagcatacgtggtgattgatccgggcatgacgccgctcaaagcgcggcagatcatg
accgaagaggattactacaacaaggtcgaggaatacggcgacgaattccgtgccgaaatg
ggcgcggaaggtattcgcgaactgctgcgcgcgatcaacatcgacgagcaggtcgagttg
ctgcgcacggaactgcgcaacacaggctcggaagcgaagatcaagaagtacgcgaagcgc
ctgaaggtgctcgaggcgttccagcgttcgggcatcaagccggactggatggtcctcgaa
gtgctgccggtgctgccgccggaactgcgtccgctggtgccgctcgacggcggccgtttc
gcgacgtcggacctgaacgacctgtatcgccgcgtgatcaaccgtaacaaccggttgaag
cgtttgctcgagctgaaggcgccggaaatcatcgtccgcaacgaaaagcggatgctgcag
gaagccgtcgactcgctgctcgacaacggccgtcgcggtaaggcgatgaccggcgcgaac
aagcgtccgctgaagtcgctcgctgacatgatcaagggtaagggcggtcgcttccgtcag
aacctgctcggtaagcgtgtcgactactcgggccgctcggtgatcgtggttggcccgacg
ctgaagctgcatcagtgcggtctgccgaagctgatggcgctcgaactcttcaagccgttc
atcttcaacaagctcgaagtgatgggtgtcgctaccaccatcaaggctgcgaagaaggag
gtcgagaaccagacgccggtcgtgtgggacatcctcgaagaggtgatccgcgaacatccg
gtcatgctgaaccgtgcgccgacgctgcaccgtcttggcatccaggctttcgaaccggtg
ctgatcgaaggtaaggcaatccagctgcacccgctcgtctgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgcacgctgatgctcgcgtcgaacaacgtgctgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggacatcgtgctcggcctgtactacgcgacgcgcgaagcggtgaacggc
aagggcgaaggcctgacgttcacgggcgtgtcggaagtgctgcgtgcgtacgagaacaag
gaagtcgagctggcctcgcgcgtcaacgtgcggatcaccgaaatggtccacaacgaagac
aagtcagaaggcgcgccggcgttcgtgccgaagatcacgctgtacgcgaccacggtcggc
cgctcgatcctgtcggaaatcctgccgccgggtctgccgttctcggtgctgaataagccg
ctgaagaagaaggaaatctcgcgtctgatcaacaccgcgtttcggaagtgcggtctgcgt
gagacggtgattttcgccgaccagctgatgcagtcgggcttccgcctggcaacgcgcgct
ggtatttcgatctgcgtcgacgatatgctcgtgccgccgcagaaggaaaccatcgtcggc
gatgccgcgaagaaggtgaaggaatacgaccgtcagtacatgtcgggtctcgtcaccgcg
caggaacgctacaacaacgtggttgacatctggtcggcgacgtcggaagcggtcggcaag
gcgatgatggagcagctgtcgacggaaccggtcacggaccgtgacggcaaccagacgcgc
caggagtcgttcaactccatctacatgatggcggactcgggtgctcgtggttccgcggtt
cagatccgtcagctggcaggtatgcgcggtctgatggcgaagccggacggctcgatcatc
gagacgccgattacggcgaacttccgcgaaggtctgaacgtgttgcagtacttcatctcg
acccacggtgcacgtaagggtctggctgatacggcactgaagaccgcgaactcgggttac
ctgacgcgtcgtctcgtcgacgtgacgcaggatctggtcgtcgtcgaggaagattgcggc
acgtcgaacggcgtggcgatgaaggcgctcgtggaaggcggtgaagtggtcgaagcgctg
cgtgaccgtattctgggacgcgtggccgtggctgacatcgtcaacccggaatcgcaggaa
acgctgttcgaagctggcacgctgctcgatgaagacgcggtcgaagacatcgaacgcctc
ggcatcgacgaagttcgcgtgcgcacgccgctcacctgcgaaacgcgctacggtctgtgc
gcggcctgctacggtcgcgaccttggccgcggttcgctggtgaacgtcggcgaagcggtc
ggtgtgatcgcggcgcagtcgatcggtgaaccgggcacgcagctcacgatgcgtacgttc
cacatcggtggcgcggcgtcgcgcgcggcggtggcttcgtcggtcgaagcgaagtcgaac
ggtacggtgcgtttcacgtcgacgatgcgttacgtcacgaatgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaggcgatgatcaccgacgatcacggccgcgagcgcgagcgt
cacaaggtgccgtacggcgccacgctgctgcagctcgacggtgcgcagatcaaggctggc
acgcaactggccacgtgggatccgatgacgcgtccgatcatcaccgagtacggtggtacg
gtgaagttcgagaacgtcgaggaaggcgtgacggtcgctaagcagatcgacgacgtgacg
ggtctgtccacgctcgtcgtgatcgacgtgaagcgtcgtggctcacaggcgtcgaagacg
gtgcgtccgcaggtcaagctgctcgatgcgaacggcgaggaagtgaagatcccgaacacc
gagcactcggtgcagatcggcttccaggtcggcgcgctgatcaccgtgaaggacggtcag
caggtccaggttggtgaagtgctcgcacgtatcccgaccgaatcgcagaagacgcgtgac
attaccggtggtctgccgcgtgtggcggaactgttcgaagcacgttcgccgaaggacgcg
ggtatcctcgcggaagtcacgggtacgacgtcgttcggtaaggacacgaagggcaagcag
cgtctcgttatcacggacctcgagggcaaccagcacgagttcctgatcgcgaaggaaaag
caggttctcgtgcacgatggtcaggtcgtcaacaagggcgaaatgatcgtcgacgggccg
gcggatccgcacgacatcctgcgtctgcagggcgtcgaggcgctgtcgcgttacatcgtg
gacgaagtgcaggacgtgtaccgtctgcaaggcgtgaagatcaacgacaagcacattgaa
gtgatcgtgcgtcagatgctgcgccgcgtccagatcacggacaacggcgatacgcgtttc
atcccgggcgaacaggtcgagcggtcggatatgctcgacgagaacgaccgtatgatcgcg
gaagacaagcgtccggcaacgtacgaaaacgtcctgctcggcatcacgaaggcgtcgctg
tcgaccgactcgttcatctccgcggcgtcgttccaggaaacgacccgcgtgctgaccgaa
gcggcgatcatgggcaagcgcgacgacctgcgtggcctgaaggaaaacgtgatcgtcggc
cgtctgatcccggccggcacgggtctcgcgttccacaaggcgcgcaagagcaaggaactg
gccgaccgcgagcgtttcgatcagatcgcagcggaagagtcgttcgaattcggtacgccg
gaaaccccggctgccgaacagcagcactcgggcgagtaa
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integrated database retrieval system
