Paraburkholderia atlantica CCGE1002: BC1002_4002
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Entry
BC1002_4002 CDS
T01217
Name
(GenBank) helicase c2
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
bge
Paraburkholderia atlantica CCGE1002
Pathway
bge03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bge00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
BC1002_4002
09124 Replication and repair
03420 Nucleotide excision repair
BC1002_4002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bge03021
]
BC1002_4002
03036 Chromosome and associated proteins [BR:
bge03036
]
BC1002_4002
03400 DNA repair and recombination proteins [BR:
bge03400
]
BC1002_4002
Enzymes [BR:
bge01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
BC1002_4002
Transcription machinery [BR:
bge03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
BC1002_4002
Chromosome and associated proteins [BR:
bge03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
BC1002_4002
DNA repair and recombination proteins [BR:
bge03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
BC1002_4002
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Tail_completion_gp17
ResIII
Phage_T7_Gp15
Motif
Other DBs
NCBI-ProteinID:
ADG18010
UniProt:
D5WHR5
LinkDB
All DBs
Position
2:complement(886922..889183)
Genome browser
AA seq
753 aa
AA seq
DB search
MSYVVAVRAMCEFTARRGDLDLRFTPAPTSLEGIAGHQMVAGRRASGYETELTLTGTHRS
LTVRGRADGYDPIANRLEEVKTYRGDLARMPANHRVLHWAQALVYGHLLCQSRGLAELTV
ALVYFDIGSQKETVLTQQHSARELEIFFVEQCERFLDWAVQEDAHRVARNAALVNLQFPY
GQFRRGQRELAVAVYRAARDGKPLMAQAPTGIGKTLATIFPLLKACGEDRLDRMFFLTAK
TPGRALALDAIDSLHQSAALPLRTLELVARDKACEHPDKACNGESCPLARGFYDRLDAAR
SAALATPRLDRAAVREAALAHEVCPYYLAQELARWADVIVGDYNYYYDASAMLHALTQIN
QWRVGVLVDEAHNLLERARRMYTASLDQSAFRLARKSAPAALKKPLERLQREWNAVKRAQ
TASYQVYAAIPGKLLSAAQNLIGAVTDQLADAPLSIDEHALRFFFDAMHFVALAEQFGEH
SMFDVTVSADRFAPRDKTSATLCVRNVIPAPFLAPRYAAARTTVMFSGTLNPQHFYRDTL
GLADDTQWLDVEGPFRAEQLQVHVAAHVSTRWRDRERSLAPIVELIAKQYDAQPGNYLGF
LSSFDYLQRVVALLRERHPGLPVWAQEPGMDEAARDAFLARFRTMNQGIGFAVLGGAFSE
GVDLTGQQLIGAFVATLGLPQVNDVNEQMRRALDARFGNGYDYMYLYPGLQKVVQAAGRV
IRTEDDRGVVHLIDDRFRRPEVRRLLPRWWQVR
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgagttacgtggtggccgtccgcgcgatgtgcgaattcaccgcgcggcgcggcgatctc
gatctgcgcttcacgcctgcgccgacttcgctcgaaggcatcgccggtcatcagatggtc
gcgggccgtcgcgcgagtggctatgaaaccgaactgacgctgacgggtacgcatcgcagt
ctgaccgtgcgtggccgcgcggacggctacgatccaatcgcgaaccggctcgaagaagtg
aagacctatcgcggcgatctcgcacgcatgcccgcgaatcatcgcgtgctgcactgggca
caggcgctcgtctatgggcatctgctgtgccagtcgcgcgggctcgccgagctgacggtc
gcgctcgtgtacttcgatatcggcagtcagaaggaaaccgtgctgacccagcagcacagc
gcgcgcgagctcgaaattttcttcgtcgaacagtgcgaacgatttctcgattgggccgtg
caggaagacgcacatcgcgtcgcgcgcaatgcggcgctagtcaacttgcagtttccgtat
gggcagtttcgccgcgggcagcgcgaactcgcggtggccgtgtatcgcgccgcgcgcgac
ggcaagccgttgatggcgcaggcgccgaccggcatcggcaaaacgctggcgacgattttt
ccgttgcttaaagcctgcggcgaagaccgtctcgatcgcatgttctttctgaccgcgaag
acgccgggccgcgcgcttgcgctcgatgcaatcgactcgctgcaccagagcgcggcgctg
ccactcagaacgctcgaactcgtcgcgcgcgacaaagcctgcgagcatccggacaaagcc
tgcaacggcgagtcctgtccgctcgcgcgcggcttttacgatcgtctcgatgcggcgcgc
tccgccgcgctggcgacgccacggctcgatcgcgcggcggtacgcgaggccgcgctcgcg
cacgaggtctgtccgtactatctggcgcaggagctcgcgcgctgggccgatgtgatcgtc
ggcgattacaactactactacgacgcgagcgcgatgctgcatgcgctcacgcaaatcaac
caatggcgcgtcggcgtgctggtcgacgaagcgcataacctgctcgaacgtgcgcggcgc
atgtataccgcgtcgctcgaccaaagtgcgttccggctcgcgcgcaagagtgcgccggcg
gcgctgaagaagccgctcgaacgcttgcagcgcgagtggaatgcggtgaaacgcgcgcag
acggccagctaccaggtgtatgcggcgatacccggcaaattgctgtccgccgcgcagaat
ctgattggcgcagtgaccgatcagctcgccgacgcgccgttgtcgatcgacgaacacgcg
ctgcgctttttcttcgacgcgatgcacttcgtcgcgctcgccgagcagttcggcgagcac
tcgatgttcgacgtgacggtgagcgccgaccgtttcgcgccgcgcgacaaaaccagtgcg
acgctatgcgtgcgcaacgtgatccccgcgccgtttctcgcgccacgctatgcggccgcg
cgtaccacggtgatgttctccggcacgctgaatccgcagcatttctatcgcgacacgctt
gggctcgccgacgacacgcaatggctcgacgtcgaaggaccgtttcgcgcggagcagttg
caggtgcacgtggccgctcatgtgtcgacgcgctggcgtgaccgcgagcgttcgctcgcg
ccgatcgtcgagctgatcgcgaagcagtacgacgcgcagcccggcaactatctcgggttc
ctgagcagtttcgactatctgcaacgcgtggtcgcgctgctgcgcgagcggcaccccggc
ttgcccgtgtgggcgcaggagcccggcatggacgaagccgcgcgcgatgcgtttctcgcg
cgcttcaggacgatgaatcaagggatcggcttcgcggtgctcggcggcgcgttttcggaa
ggtgtcgatctgaccggacagcaactgatcggcgcgttcgtcgcgacgctcggtctgccg
caggtcaacgacgtcaacgagcagatgcgccgcgcgctcgatgcgcgcttcggcaacggc
tatgactacatgtacctgtatccgggattgcagaaggtcgtgcaggcggcgggtcgcgtg
atccgcaccgaagacgatcgcggcgtcgtgcatctgatcgacgaccgctttcgccggccc
gaagtgcggcgtctgttgccgcgctggtggcaggttcgctag
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integrated database retrieval system
