Paraburkholderia atlantica CCGE1002: BC1002_4025
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Entry
BC1002_4025 CDS
T01217
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bge
Paraburkholderia atlantica CCGE1002
Brite
KEGG Orthology (KO) [BR:
bge00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bge03032
]
BC1002_4025
03400 DNA repair and recombination proteins [BR:
bge03400
]
BC1002_4025
Enzymes [BR:
bge01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BC1002_4025
DNA replication proteins [BR:
bge03032
]
Prokaryotic type
DNA Topoisomerases
BC1002_4025
DNA repair and recombination proteins [BR:
bge03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BC1002_4025
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
ADG18032
LinkDB
All DBs
Position
2:909532..910818
Genome browser
AA seq
428 aa
AA seq
DB search
MATPTHSTTANGNTAPQPMPPGLRHADDAKPGYTRKRERDRFVYFDVNGKRIVDEDEIRR
INSLAIPPAYENVWICPDPRGHLQATGRDSRGRKQYRYHPRWRETRDADKYERMAEFGRA
LPKIRARVARDLKLPGMPLDKVVAAIVQLLDTTLIRVGSAEYARDNQSYGLTTLRKRHVK
IKAGRLRFQFRGKSGIEHDVTVDNPNVKRIVRRCAELPGHDLFQYLDEDGTRHSVGSTDI
NDYLRRVSGADFTAKDYRTWAGSVYALAALRRLMCSSAAEARGHIVATVKEVANLLRNTP
AVCRRCYIHPAIISAFEADELRSLTPAQARRGLKVDEVAFAVLLAQAEKRAAKLARASAA
KGRKTRKSSADGSINGSLTSLLKKSRVVRRKAPAAEQKGAAAQRRATARAGTPRTAPELA
SESKPAAQ
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggctaccccgacccactccacgaccgcgaatggcaataccgcaccacagccgatgccg
ccgggcctgcgccacgccgacgacgcgaagcccggctacacacgcaagcgcgagcgggac
cgcttcgtctatttcgacgtgaacggcaagcgcatcgtcgatgaggacgagatccgacgc
atcaactcgctcgcgatccccccggcctacgaaaacgtctggatctgccccgatccgcga
ggtcatctgcaggcgacgggccgcgactcgcggggccgcaagcagtaccgctatcacccg
cgctggcgcgaaacgcgcgacgccgacaagtacgaacggatggccgagttcggccgcgcc
ttgccgaaaatccgcgcgcgcgtcgcgcgtgatctgaagctgcccggcatgccgctcgac
aaggtcgtcgcggccatcgtgcagttgctcgacacgacgctgattcgcgtcggcagcgcc
gaatacgcgcgcgacaatcagtcgtacggattgactacgttgcgcaagaggcacgtgaag
ataaaggccggtcgattgcgcttccagtttcgcggtaagagcggcatcgagcacgacgtg
acagtggacaatccgaacgtcaagcgcatcgtgcgacgttgcgcggagttgcccggccac
gacctgtttcagtatctcgacgaagacggcacgcgccacagcgtcggctcgaccgatatc
aacgactacctgcgccgcgtgagcggcgcggacttcaccgcgaaggactaccgcacctgg
gccggcagcgtgtacgcgctggcggcattgcgccgtttgatgtgcagcagcgcagccgaa
gcgcgcggccatatcgtcgcgaccgtgaaagaggtggcgaacctgctgcgcaatacgccc
gctgtgtgccggcgctgttatatccaccccgcgatcatcagcgcgttcgaagccgacgag
ttgcggagcctcacgccagctcaagcgcgccgcggactcaaggtggatgaagtggccttc
gcggtgctgctggcgcaggcggagaaacgcgcggcgaaactcgcgcgcgcatccgctgcg
aaaggacgcaagacgcgaaagtcgtcggccgacggcagcatcaacggttcgctgacgagt
ctgctgaagaaatcccgcgtggtgcgcaggaaagctcccgccgcagaacagaaaggcgcc
gcggcccagcggcgagccacagcccgcgctggtacgccgcgcactgcgccagaactggca
tctgaatctaaaccggcggcccagtga
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