KEGG   Paraburkholderia atlantica CCGE1002: BC1002_4040
Entry
BC1002_4040       CDS       T01217                                 
Name
(GenBank) DEAD/H associated domain protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
bge  Paraburkholderia atlantica CCGE1002
Brite
KEGG Orthology (KO) [BR:bge00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bge03400]
    BC1002_4040
Enzymes [BR:bge01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BC1002_4040
    5.6.2.6  RNA 3'-5' helicase
     BC1002_4040
DNA repair and recombination proteins [BR:bge03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    BC1002_4040
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD WH4_Lhr Helicase_C WH3_Lhr Cas3-like_C_2 ResIII DprA_WH DUF5805 AAA_22
Other DBs
NCBI-ProteinID: ADG18046
UniProt: D5WHV1
LinkDB
Position
2:923086..927615
AA seq 1509 aa
MTSAKSSAALDAAPRSRKARSTASAAHPAAPAMPEAPQALAGFHPAVASWFQKTFAAATD
VQAAAWPQIRSGRSTLVAAPTGSGKTLTAFLSALNDLVSQGLANDGALPDETLVVYVSPL
KALSNDIRLNLQLPLQGIAAELDALGLPPLDIRTAVRTGDTTQQERNALKKRAPHILVTT
PESLYVLLGSDSGRRMLATVRTVIVDEIHALAGSKRGSHLALSLERLDALCGRPLPRIGL
SATQKPVSAVARFLVGGASLDSDVPAECAVIDVGHVRARDLALEIPPVPLEAVMANEVWE
RVYDRLAELVAQHRTTLIFVNTRRMAERAARHLTERLGKDAVAAHHGSLAKEHRFDAEQR
LKRGELRVLIATASLELGIDIGDVDLVCQMGSPRAIAPFLQRVGRSGHHVGGMPKGRLFP
ASRDDLLECAALLDCVRRGELDALRIPRAPLDVLAQQIVAEVSSAEWSEDALFDMLRRAA
PYADLPREQYDAVLRMLAEGYTSRHGPRAAYVHRDAVSGTLRGRRGGKLVAVTSGGTIPE
NADYAVVLEPQALNIGTVNEDFAVESLAGDVFQLGNASYRILRIESGRVRVEDAQGQPPN
IPFWLGEAPGRSDELSFAVARLREQVEALLTEREAQATTATVLPASEPEPSAPRLDHAIT
RLADHLALDEPAARQIVEYLARARAALGVLPTQSTLVMERFFDESGGTQLVIHSPFGSRV
NRAWGLALRKRFCRSFNFELQAAATEDAIVLSLTGSHSFVLDDVWRYLHSNSAEHLLIQA
LLDAPLFGVRWRWNATTSLGLPRYTGGRKTAPQLQRMRSEDLLASVFPEQAACLENIVGE
REVPRHPLVDQTIDDCLHDAMDSERWLALLRQIEHGELRLVARDLPAPSPLAAEILTAKP
YAYLDDAPIEERRTQAVLNRRWTDPETADDLGALDAAAIDSVRDEAWPQARNADEMHEAL
TGLACITEAEARTYEDWPALLAALAKAGRATRLPLATQADASTGNDSALWLPAERLTCFE
ALYPAIERNRYEPPLNAPKGYTESWSADDALVDVLRARLTGFGPLTVDAIARPLGLPAGR
IEPALLRLETEGYLLRGRFTPHTTHEEWCERHLLARIHRYTVKRLRREIEPVERHDFMRF
LFEWQHLTPTTRAEGREALAAALDQLEGFQAAAGAWEEDILPARMRAYTSSSLDELCRAG
KIVWTRLTERARGAAGPVRGTPIVLLPRAQLRAWRALLDPARQVELSALAQSVHDTLAQH
GAMFFDELLAEVRVLRMELENALGELVAAGLANSDSFAGLRALLKPIAKRNAFSSSRRAR
ASALIGGMDDAGRWALVSRPSAVAPENPSERRSQLPPEVLEHVAMTLLRRYGVVFWRVLE
REAEWLPPWRDLLRVLQRLEARGVIRGGRFVNGLAGEQFALPEAIPLLREVRRQANDGAL
ICVAGTDPLNLVGTLLVGEKVPAVAGNRVLYRDGVVAATLVAGKFWFDAALDANPIERER
ARALLTHRF
NT seq 4530 nt   +upstreamnt  +downstreamnt
atgacttcggcaaaatcttccgccgcactcgacgcggcgccccgctcccgcaaggcccgc
tccaccgccagcgcggcgcaccccgccgcgcccgccatgccggaggccccgcaggcactc
gccggctttcacccggccgtcgccagctggtttcagaaaaccttcgccgccgcgaccgat
gtacaagccgccgcctggccgcaaatccgtagcggccgctcgacgctggtcgccgcgccg
accggctccggaaagacgctgaccgcgttcctgtcggcgctgaacgacctggtgtcgcaa
ggcctcgcgaacgacggcgcgctgcccgacgaaacgctggtcgtctacgtgtcgccgctg
aaggcgctgtcgaacgacatccgcctgaacctgcaactgccgctgcaaggcatcgccgcc
gaactcgacgcgctcggactgccgccgctcgacatccgcaccgccgtgcgcaccggcgat
accacacagcaggaacgcaacgcgctgaaaaaacgcgcgccgcacattctcgtgacgacg
cccgagtcgctatacgtactgctcggctccgattcgggccgccgcatgctggcgacggtg
cgcacggtgatcgtcgatgaaattcacgcgctcgcgggcagcaagcgcggcagtcatcta
gcgctgagtctcgaacggctcgacgcgctctgcggccggcccctgccgcgcattgggctg
tcggcgacgcaaaaaccggtcagcgcggtcgcgcggtttctggtcggcggcgcgagtctg
gatagcgacgtgccggccgagtgcgcggtgatcgacgtcggtcacgttcgcgcgcgcgac
ctcgcgctcgagatcccgccggtgccgctcgaagcggtgatggccaacgaagtgtgggag
cgcgtctacgaccggctcgccgagctggtcgcgcagcatcgcacgacgctgatcttcgtc
aacacgcgccgcatggccgagcgcgccgcgcgtcatctgaccgagcggctcggcaaggac
gcggtcgccgcgcatcacggcagcctcgcgaaagaacatcggttcgacgccgaacagcga
ctgaaacgcggcgaactgcgcgtgctgatcgcgaccgcgtcgctcgaactcggcatcgat
atcggcgacgtcgatctcgtctgccagatgggttcgccgcgtgcgatcgcgccgttcctg
caacgcgtcggccgctccgggcaccacgtcggcggcatgccgaaggggcgactgtttccg
gcctcgcgcgacgatctgctcgaatgcgcggcgctgctcgattgcgtgcggcgtggcgag
ctcgatgcgttgcgcatcccgcgcgcgccgctcgacgtgctcgcgcaacagatcgtcgcg
gaggtgtcgagcgccgagtggagcgaggacgcgctgttcgacatgctgcggcgtgccgcg
ccgtacgcggatctgccgcgcgagcaatacgacgcggtgctgcgcatgctcgccgagggc
tacacgagccgccacggtccgcgtgctgcgtatgtgcatcgcgatgcggtcagcggcacg
ctgcgcggccggcgcggcggcaagctggtcgcggtgacctcgggcggcacgattcccgag
aacgccgattacgcggtcgtgctcgaaccgcaggcgctcaatatcggcaccgtcaacgag
gacttcgcggtcgaaagcctcgccggcgatgtgtttcagctcggcaacgcgtcgtaccgg
attctgcgcatcgaaagcggccgcgtgcgggtcgaggacgcacaaggccagccgccgaac
attccgttctggctcggcgaggcgccggggcgcagcgacgagctgtcgttcgcggtagcg
agattgcgcgagcaggtcgaagcgttgctgacggagcgcgaggcacaagcaacaacggca
accgtcctacccgcaagcgaacccgaaccctccgccccgcgtctcgaccacgccatcacc
cggctagccgaccacctcgcgctcgacgaacccgccgcgcgccagatcgtcgaatacctg
gcacgcgcccgcgccgcgctcggcgtcttgccgacgcagagcacgctcgtgatggagcgc
ttcttcgacgaatcgggcggcacccagctcgtgattcactcaccgttcggcagccgcgtg
aatcgtgcgtgggggctcgcgctgcgcaagcgcttctgccgcagcttcaacttcgagttg
caggccgcggccaccgaagacgcgatcgtgctgtcgctgaccggcagccactcgttcgtg
ctcgacgatgtgtggcgctatctgcattcgaacagcgccgagcatctgctgatccaggcg
ctgctcgatgcgccgttattcggcgtgcgctggcgctggaacgcgacgacctcgctcggc
ctgccgcgctacacgggcgggcgcaagaccgcgccgcaactgcagcgcatgcgcagcgag
gatctgctcgcaagcgtgtttccggagcaggccgcgtgtctggagaacatcgtcggcgaa
cgcgaggtgccgcgccacccattagtcgaccagaccatcgacgactgtctgcacgacgcg
atggacagcgaacgctggctcgcgctgctacgccagatcgagcacggcgagttgcggctc
gtcgcgcgtgatttgccggcgccgtcgccgctcgccgccgaaattttgaccgcgaagccc
tatgcgtatctggacgacgcgccgatcgaggagcgccgcacccaggcggtactgaaccgc
cgctggaccgaccctgaaaccgccgacgatctcggcgcgctcgacgccgccgcgatcgac
agcgtgcgcgacgaagcctggccgcaagcacgcaacgccgacgaaatgcacgaagcgctg
acgggcctcgcctgcatcaccgaggcggaggcgcgcacgtatgaggattggcccgcgctg
cttgcggcgttggccaaagccggccgggcgacgcgtttgccgctggccacgcaagcagac
gcaagcacgggcaacgacagcgccctgtggctgcccgccgagcgcctgacctgcttcgaa
gcgctctaccccgccatcgagcgcaatcgctacgagccgccgctgaacgccccgaagggc
tacaccgagagctggagcgccgacgacgcgctggtcgacgtgctgcgcgcgcggctgacc
ggtttcggcccgctgacggtcgacgcgatcgcgcgcccgctcggtttgcccgccggccgg
atcgaaccggcgctgctccgtctcgaaaccgaaggctacttgttgcgcggccgcttcacg
ccgcacacgacccacgaagaatggtgcgagcggcacctgctcgcacgcatccaccgctac
acggtgaagcggctgcggcgggaaatcgagccggtcgagcggcacgacttcatgcgcttc
ctgttcgaatggcagcatctgacgccgaccacgcgcgctgaaggccgcgaagcgctcgcc
gccgcgctggaccagctcgaaggcttccaggccgcggccggcgcgtgggaggaggacatc
ctgcccgcgcggatgcgcgcctacaccagcagttcgctcgatgagctatgccgcgccggc
aagatcgtctggacccgcctgaccgagcgggcgcgcggcgctgccggtccggttcgcggc
accccgatcgtgctgctgccgcgcgctcagttgcgcgcgtggcgcgcgctgctcgatccg
gcgcgccaggtcgagttgtcggcgctcgcgcaaagcgtgcacgacaccctcgcgcaacac
ggcgcgatgttcttcgacgaactgctcgccgaggtgcgcgtgctgcgcatggagctcgaa
aacgcgctcggcgaactggtcgcggccggcctcgcgaactccgacagtttcgccggtctg
cgcgcgttgctgaagccgatcgccaaacgcaacgcgttttccagcagccggcgcgcgcga
gcgagcgcgctgatcggcggcatggacgacgccgggcgttgggcgctcgtcagccgcccg
tccgccgtcgcgccggaaaatccgtcagagcggcggagtcagttgccgcccgaggtgctc
gaacacgtcgcaatgacgttgttgcgccgctacggcgtggtgttctggcgcgtgctcgaa
cgcgaggccgaatggctgccgccgtggcgcgatctgctgcgcgtgctgcagcggctcgag
gcgcgcggcgtgatccgcggcgggcgcttcgtcaacgggctcgccggcgagcagttcgcg
ctgcccgaggcgattccgctgctgcgcgaggtgcggcgacaagcgaacgacggtgctctt
atctgcgtggcgggaaccgatccgctgaatctcgtcggcacgctgctggtcggcgaaaag
gtgccggccgttgccggcaaccgcgtgctgtatcgcgacggcgtagtggcggccacgctg
gtggccggcaagttctggttcgacgcggcgctcgacgccaatccgatcgagcgcgaacgc
gcccgcgcgctgctcacccaccgcttctag

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