Paraburkholderia atlantica CCGE1002: BC1002_6017
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Entry
BC1002_6017 CDS
T01217
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bge
Paraburkholderia atlantica CCGE1002
Pathway
bge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BC1002_6017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bge03019
]
BC1002_6017
Enzymes [BR:
bge01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BC1002_6017
Messenger RNA biogenesis [BR:
bge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BC1002_6017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
B12-binding
Motif
Other DBs
NCBI-ProteinID:
ADG19887
UniProt:
D5WKZ1
LinkDB
All DBs
Position
3:470640..472085
Genome browser
AA seq
481 aa
AA seq
DB search
MSFASLGLIDPLLRNVQDLNYQIPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLL
QRLVQRGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGRGLDLRFLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQR
QTLLFSATFTDDIRAMAANILRGPVNISVSPPNATASRIKQWVVPVDKKNKPDLFMHLVA
ENGWQHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKAGEVQMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLPRKEEPGFEAEHRVPQTSATGQIIKKPKKPKAPKVPHAAPGAMRPLGKKTASQ
RGENKRKPAAQRAVAAGKGARLSGGNSMSVQKPRSKPAGKPAAGSRKPAGKPAGGRGKRQ
P
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcctcgcttggcctgatcgatcccttgctgcgtaatgtgcaggacctcaat
taccagatacctacgccggtgcaggccaaggcgattcctgccgtgctcggtggcaaggac
gtcatggctgccgcacagaccggcactggcaaaacggccggctttgcgctgccgctgttg
caacggctggtgcaacgcggcccggcggtgtccagcaatcgcgcgcgcgttctggtgctg
gtgcccactcgtgaactggctgaacaggtgctgcaaagctttatcgcttacggcagaggc
ctcgacttacgatttctggccgcctacggcggtgtaagcatcaatccgcagatgatgaaa
ttgcgcaaaggcgtggatgtgctggttgccacgccgggccgtttgctcgatctcaatcgc
cagaacgcagtgcagtttgatcaggtacaaacgctggtgctggacgaagccgatcgcatg
ctggatctgggctttgcgcgcgaactcaacgccgtcttcgctgccttgcccgcgcagcgc
cagaccctgctgttctccgccacgtttaccgatgatatccgcgcgatggcggcgaacatt
ctgcgcggcccggtcaatatcagcgtcagcccgcccaacgccaccgccagcaggatcaag
cagtgggtggtgccggtggacaaaaagaacaagcctgacctcttcatgcacctggtggct
gagaacggctggcagcacgcgctggtgttcgtcaagacccgcaatggcgtggattacctg
gcggccatgctggatgaagcgggctatgcggtcgacaccatccacggcgacaaaccccaa
cccgcgcgcctgcgtgcgctggagcgcttcaaggcgggcgaagtgcaaatgctggtggcc
accgatgtggctgctcgcgggctggatatcgacgacctgccgctggtgatcaacgttgat
ctgccgatcgtggcgcaagactatgtgcaccgtattggccgaaccggccgcgcgggcgcc
agcggcgtggcggtgtctcttgtgtgtgccgatgaagcgccgcaactggccgcgatcgaa
gcgctgatccgacaaacgctgccccgcaaagaagagccgggcttcgaggccgaacaccgc
gtgccgcaaaccagcgcgacgggccagatcatcaagaaacccaaaaagcctaaggcgccc
aaagtgccgcacgccgcaccgggcgcgatgcggccgctcggcaaaaaaacggcctcacaa
cgcggcgaaaacaaacgcaagcccgcggcgcagcgcgccgtggccgcgggtaaaggcgca
cgcttgtccggcggcaactcaatgagcgtgcaaaagccacgcagcaagcccgccggcaag
cccgccgcgggttcacgtaagccggccggcaagcccgctggtggccgcggcaaacgccaa
ccctga
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