Paraburkholderia atlantica CCGE1002: BC1002_7028
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Entry
BC1002_7028 CDS
T01217
Name
(GenBank) Pectate lyase/Amb allergen
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bge
Paraburkholderia atlantica CCGE1002
Pathway
bge00040
Pentose and glucuronate interconversions
bge01100
Metabolic pathways
bge02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
bge00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
BC1002_7028
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
BC1002_7028
Enzymes [BR:
bge01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
BC1002_7028
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
ADG20802
UniProt:
D5WNC3
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All DBs
Position
pBC201:276083..277285
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AA seq
400 aa
AA seq
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MKPRLILTILIAYLLCACVGGHGSSSAPAPSVVTGLRSNFNQTAITARLPTDTGGFATAT
GSDDPAVTVDSLADLLAAFSARQHHILVKGEIYGGPRLTTITFASTDWNNTTIEGASGGN
AVLKNVQLKFDGEMLPADQNIQNVVIRNITFHGVIGDLQALPAQVYGTSNNAGINYEGVS
LRRVTNAWVDHCSFYDTSDNLMSVTLSSDNVTVSYSRFYFTNEWRAMRPDPLWDWTGKNQ
DLANERLAMVVGASRQDSYAYGGHRLHVTLHHNQFGPNLKGRPLLRGWVHAYDNYFDNDA
APTGLTAVGSDETQYNALQIGSGSVVYVESNYFLKTNQSIQVGLDLPDDVYSFHENANQY
VQSTGRSAKGEAFSIAPVGYAYRVGTASSVLNAASAYGPR
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgcggctgatcctgacaatattgatcgcatatctgctgtgcgcttgtgttgga
gggcacgggtcgtcttctgcgccagccccctcagtagtgacaggcttgcggtccaatttc
aatcagaccgcaattaccgcgcgtctgccgacggacaccggcggtttcgcaacggcgacc
ggatcggacgatccagccgtcacggtcgacagcctcgctgatctgctggcagcgttcagc
gcgcgacagcaccacatcctagtcaagggcgaaatctacggcggaccgcgactgacgacc
atcaccttcgccagcacggactggaacaacacgacgatcgaaggcgccagcggtggcaat
gcggtgctgaaaaacgtccagcttaaattcgacggcgaaatgctgccggcagaccagaac
atccagaatgtcgtgatcagaaacatcacttttcatggcgtcatcggagatctacaggcc
ctacccgcccaagtctacggcacatccaacaacgccggcatcaactatgaaggcgtgtcg
ctgcgacgggtcaccaatgcatgggtcgatcattgttccttctacgacacgagcgacaat
ctgatgagtgtgacgctgtcatcggataatgtgacggtctcgtatagccggttttatttc
accaatgaatggcgggcgatgcgccccgatcccctgtgggactggacgggcaagaaccaa
gatctggccaatgaacgcctggcgatggtagtgggcgcatctcggcaggattcgtatgca
tatggtgggcacaggctacatgtcaccttgcaccataaccagttcggccccaacctaaag
gggcgtccgctgctgcggggctgggtccacgcctacgacaattatttcgataacgacgcc
gcaccgactggcctcacggccgtcgggtcagacgagacccagtacaacgccctgcagatc
ggaagcggcagcgtcgtctatgttgaaagcaactattttcttaaaactaaccagagcatt
caggtcggtctggatttgccggacgatgtctactcttttcatgaaaacgcaaaccaatac
gttcagtccaccggcagatcggcaaagggagaggctttttcaatcgcgcccgtcggttac
gcctatcgagttgggacggcctcgtccgttctcaacgccgcgtcggcctacggtcctcgc
tag
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