Paraburkholderia atlantica CCGE1002: BC1002_7058
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Entry
BC1002_7058 CDS
T01217
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bge
Paraburkholderia atlantica CCGE1002
Pathway
bge02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bge00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BC1002_7058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bge03021
]
BC1002_7058
Transcription machinery [BR:
bge03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BC1002_7058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
ADIP
Motif
Other DBs
NCBI-ProteinID:
ADG20819
UniProt:
D5WNE0
LinkDB
All DBs
Position
pBC201:complement(306350..308341)
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AA seq
663 aa
AA seq
DB search
MAKVDPCNSGPDTAASAPKASARRASKSKATAGLLPVDIVSPDEEQQRQMRALIQLGKER
GYLTHAEINDHLPDNFAQTAAIETIVSTFNDMGVAVYEQAPSAEVLLMNDATPATMLDDQ
ADEEAEVALSSVDSEFGRTTDPFRMYMREMGATGLLTRAGEIEIAKRIEGGLHEMVQAIA
VSPATVSAILLSAKQIEAGELRIDELVDGINAETESVEQSSTDFAEEPDTEQATADDDGG
GDEHSEIEDRDTARSNEARLKQLTSDSLVIFARVRELFEQISGSQAAQGKGRVARADLRE
AIQRELAPIRFTARTIDRLCNAVQQQVAQVRAVERHILQIAVDRCGMPREKFVESFQGRE
TDLAWSESTAAASREYGAALERSLPAIQAEQRKLLDIETKVGLPLQQLKKINRQMMAAES
KMLQAKREMIEANLRLVISIAKKYVNRGMHFLDLIQEGNIGLMKAVDKFEYRRGWKFSTY
ATWWVRQAVTRSLADQARTIRIPVHMMESINKLNRISREILQQTGREAHPAVLAQRMEVP
EEKVRAMLKIGRQPLSLETPVGDEADTTLSDVIEDPMATSPADAAVQANLRAAINTALDA
LSPREAKVLRMRFGIDTASDCTLEELGKQFDLTRERIRQIESKAMRKLMHPNRTAKLRPF
LDH
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaggttgatccgtgcaattcaggtccagacacagctgcatcagcgccgaaagcg
tcggcccggcgcgcatcgaagagcaaggcaaccgcaggcctgctgccggtggatatagtg
tcgccggacgaagagcagcagcgtcagatgcgcgcactcattcagctcggcaaggagcgc
ggctacctgactcatgccgaaatcaacgatcatctgccggacaacttcgcgcagaccgct
gccattgaaaccattgtcagcaccttcaatgacatgggcgtcgcggtctacgaacaggcg
ccttcagcggaggtgctgcttatgaacgacgcgacgccggcaaccatgttggatgaccag
gccgacgaggaggcggaagtcgcgctttccagcgtcgattcggaattcgggcgtacgacc
gatcccttccgcatgtatatgcgtgaaatgggcgcgaccggattgttgactcgcgcgggc
gagatcgagattgcgaagcgaatcgaaggcggcctccacgaaatggtccaggcgattgcg
gtcagcccggcgactgtctccgcgatccttctgagcgcgaagcagattgaagccggtgaa
ctgcgcattgacgaactggttgacggtatcaatgcggaaaccgaatcggtcgaacagtcg
tcgacggacttcgctgaagagccggacaccgagcaggccaccgctgacgacgacggcggc
ggcgatgagcacagcgagattgaagaccgagacacggcgaggtcgaacgaagcgcggctg
aaacaactcacgagcgacagcctcgttatttttgcccgggtgcgcgagctgttcgagcag
atttctggttcccaggctgcgcagggtaaggggcgggtggctcgcgccgacctgcgtgaa
gcgatccagcgcgagttggcgcccattcgattcacggcgcgaaccatcgatcggctatgt
aacgctgtgcaacagcaggtcgcacaggtgcgcgcagtcgagcgccatattctgcaaatt
gctgttgaccgatgcggcatgccgcgcgagaagttcgtcgagtcgtttcagggacgcgaa
actgatctcgcgtggtctgaaagcacggcggcggcgtcgcgcgagtacggcgccgcgctc
gaacgtagtctgccggcgattcaggctgaacagcggaagcttctcgatatcgaaacgaag
gtcggactgccgttgcagcagttgaagaagattaaccggcagatgatggcggccgagtcg
aagatgctgcaggcaaagcgcgagatgatcgaggccaacctgcgcctcgtgatctccatt
gcgaaaaaatatgtgaaccggggcatgcacttcctggatctcatccaggaaggaaatatc
ggtctgatgaaagccgtcgacaaattcgaatatcgacgcggctggaagttttcaacctac
gcaacgtggtgggtgcggcaggcagtcacgcgttcgcttgcggatcaggctcgcacgatc
cggattcccgttcacatgatggagtcgatcaacaagctgaaccggatttcccgcgagatc
ctgcaacaaacgggacgcgaggctcatcctgcggtgttggcgcagcgcatggaagtaccg
gaagagaaagttcgcgccatgttgaagattgggaggcagccattatcgcttgagacgcca
gtgggtgacgaggctgatacgacacttagcgatgtgatcgaagatccgatggcgacgtcg
cccgccgatgcggccgtgcaggcgaatctgcgagccgcgatcaatacggcgcttgacgca
ttgtcgccgcgtgaagcgaaggtgttgcggatgcgtttcgggatcgataccgcatctgac
tgtacgcttgaggaactgggcaaacagtttgacttgacgcgcgaacggatccggcagatc
gaaagcaaggcgatgcgaaagctgatgcatccgaaccgcaccgccaagctacgaccattt
ctcgaccattaa
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