Bradyrhizobium genosp. A: ACP2YP_20425
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Entry
ACP2YP_20425 CDS
T11253
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bgea Bradyrhizobium genosp. A
Pathway
bgea03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bgea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACP2YP_20425 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgea03400
]
ACP2YP_20425 (mfd)
Enzymes [BR:
bgea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACP2YP_20425 (mfd)
DNA repair and recombination proteins [BR:
bgea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACP2YP_20425 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
XRZ32554
LinkDB
All DBs
Position
complement(4419790..4423308)
Genome browser
AA seq
1172 aa
AA seq
DB search
MKPGMKSPAELLAPGRALTLANVAEGAEGLVISDLARAIAARPKKPAVSLAVVCRDGARM
QQLERALQFFAPDLPVLTFPAWDCQPYDRVSPHGGILAQRLTTLARLASLAGSDKPLIVL
TTVNAVVQRVPARELVAAQALSVAPGNVVPMDTIVAWLEHNGYNRSSTVREPGEYAVRGG
ILDLFPAGLEQPVRFDFFGDSLESIRTFDAETQRTLLDMRALDLVPISEFQLVTDTIRRF
RMGYVAEFGAPERDDALYEAVSEGRRHPGMEHWLPLFQDRMDTLFDYLQGAAVAIEPQAE
DAVRERFKQIQDYYEARRDAMEHPGGGAIYKPLPPDRLYVTEEEWTRRLADVPLARLTQF
SVPADGTSVVDAGARKGRDFAPERNDTTVNVFESVVSHVMALHASRKKVVIALWSEGSRD
RMTSMLRDHKLTHTTSVNSWRTVQATPRNETMLAVLGLESGFETDEIALISEQDILGDRL
VRPRKASRKLDNFISEVTSLTAGDIVVHVDHGIGRFVGLQTLDVAGAPHDCLELHYAAET
KLFLPVENIELLSRYGSDQTTVELDRLGGGGWQTRKAKLKNRIREIAGELIKIAAARHLH
EAPKLMVQPGVYDEFCARFPYDETEDQLGAIESTLKDLELGRPMDRLICGDVGFGKTEVA
LRAAFAVALDGRQVAVVVPTTLLARQHCRTFTERFKGFPVNVAQASRLVPTKQLNEVKKG
IADGSVDIVVGTHALLGKAIKFRDLGLVIVDEEQHFGVTHKERLKALRAEVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IDDLAEVKDFLDKNVPEMKVAVAHGQMPPAVIEDIMTAFYDGKFDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITAQAERRLTVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIVNLKAGVSEPAADRW
SPTITIGMPVLIPEDYVGDLSVRLSLYRRLADLDSEEEIENFGAEMRDRFGVLPDEVRYL
FKVAAIKAFCRQANVGKIDAGPKGAVITFRDNSFAHPDRLVTFIRSHGQAAKVRPDMKVV
FLQDWETPEERLVGTTEIMRQLAQLATSKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgggaatgaaatctccggccgagctacttgcgcccggccgcgcgctgacgctt
gccaatgtcgcggaaggcgccgaaggcctggtcatctcggatctggcgcgcgccatcgcg
gcgcggccgaagaaaccggcggtgagccttgccgtggtctgccgcgacggggcgcggatg
cagcagctcgaacgcgcgctgcagttcttcgcgcccgatctgccggtgctgaccttcccg
gcctgggattgccagccctatgaccgtgtctcgccgcacggcggcattttggcgcaacgc
ctgaccacgctggcgcgcctggcctcgctcgccggcagcgacaagccgctgatcgtgctg
accaccgtgaacgcggtggttcagcgcgtgcccgcgcgtgagctcgtcgcggcgcaggcg
ctgtcggttgcgccgggcaatgtcgtgccgatggacaccatcgtcgcctggctcgagcac
aacggctacaatcgctcctcgaccgtgcgcgagcccggagaatacgccgtgcgcggcggc
attctcgacctgtttcccgccgggctcgaacagccggtccggttcgacttcttcggcgac
agcctggaatcgatccgcaccttcgacgccgagacccagcgcacgctgctcgacatgcgc
gcgctcgacctggtgccgatctcggaattccagctcgtcaccgacaccatccgccgcttc
cgcatgggctacgtcgccgagttcggcgcacccgagcgcgacgatgcgctgtacgaggcc
gtcagcgaaggccgccgccatcccggcatggagcactggctgccgctgttccaggaccgg
atggacacgctgttcgactatctgcaaggggcagccgtcgcgatcgagccgcaggccgag
gacgccgtccgcgagcgcttcaagcagatccaggactattacgaggcccgccgcgatgcg
atggagcatcccggcggcggcgccatctacaagccgctgccgcctgatcggctttatgtc
accgaagaagaatggaccaggcgccttgccgacgtcccgctggcacggctgacgcagttc
tccgtgccggccgacggcaccagcgtcgtcgatgccggcgcccgcaagggccgcgacttc
gcgcccgagcgcaacgacaccaccgtcaacgtgttcgaatccgtcgtcagccacgtcatg
gcgctgcatgcgagccgcaagaaggtcgtgatcgcgttgtggagcgaaggctcgcgcgac
cgcatgacctcgatgctgcgcgaccacaagctgacccacaccacgagcgtcaatagctgg
cggacggtgcaggcgaccccgcgcaacgagaccatgctcgccgtgcttggcctggagagc
ggtttcgagaccgacgagatcgcgctgatcagcgagcaggacattctgggcgaccgcctg
gtgcggccgcgcaaggcgagccgcaagctcgacaatttcatctcggaggtgacgagtctc
accgccggcgacatcgtcgttcacgtcgatcacggcatcggccgctttgtcggcctgcag
acgctggacgtcgccggcgcgccgcatgactgtctcgagctgcattatgcggccgaaaca
aagctgtttctgccggtcgaaaacatcgagctgttgtcgcgctacggctccgaccagacc
accgtcgagctcgaccgcctcggtggcggcggctggcaaacccgcaaggcaaagctcaag
aaccgcatccgcgagatcgcgggcgagctgatcaagatcgccgccgcgcgccatctgcac
gaggcacccaagctgatggtgcagccgggcgtctacgacgaattctgtgcgcgcttcccc
tatgacgagaccgaggaccagctcggcgccatcgaatccaccctgaaggatctcgaactc
ggccgtccgatggatcggctgatctgcggcgacgtcggctttggcaagacggaagtggcg
ctgcgcgcggccttcgccgtcgcgctcgacggcaggcaggtcgcggtcgtggtgccgacc
acgctgctggcgcgccagcactgcaggaccttcaccgagcgcttcaagggctttccggtg
aacgtggcgcaggcctcgcgcctggtcccgaccaagcagctcaacgaggtcaagaagggc
atcgccgacggctcggtcgacatcgtcgtcggcacccacgcgctgctcggcaaggccatc
aaattccgcgacctcggcctcgtcatcgtcgacgaggagcagcatttcggcgtcacgcac
aaggaacggctgaaggcacttcgcgccgaggtgcacgtgctgacgctgtcggcgacgccg
atcccgcgtacgctgcaattggcgctgaccggcgtccgcgagctctcgatcattgcctcg
cccccggtcgatcgcctcgcggttcgcaccttcgtcgccccgcatgatcccttgatgatc
cgcgaggcgctgctgcgcgagcgctatcgcggcggccaggcgttctatgtggtgccgcgc
atcgatgacctcgccgaggtcaaggacttcctcgacaagaacgtgccggagatgaaggtt
gcggtcgcgcacgggcagatgccacccgccgtgatcgaggacatcatgaccgcgttctac
gacggcaagttcgacatcctgctgtcgaccaccatcgtggaatccggcctcgacatcccc
aacgccaacacgctgatcgtgcaccgcgccgacatgttcggcctcgcccagctctaccag
ctccgcggccgcgtcggccgctccaagctgcgggcctacgcgctgttcacgctgccggcg
cagcagaagatcacggcacaggccgagcgccggctcaccgtgctgcaatcgctggagacg
ctgggcgccggcttccagctcgcctcgcacgacctcgacattcgcggcgccggcaatctg
ctcggcgaagagcagtccggccacatcaaggaggtcggcttcgagctctaccagtcgatg
ctggaggaggcgatcgtcaacctcaaggccggtgtctccgagcccgccgccgaccgctgg
tcgccgacgatcaccatcggcatgcccgtgctgattccggaggattatgtcggcgatctc
tcggtgcggctgtcgctctaccggcgcctggccgatctcgacagcgaggaggagatcgag
aactttggcgccgagatgcgcgaccgcttcggcgtgctgccggacgaggtgcgctacctc
ttcaaggtcgccgcgatcaaggcgttctgccgccaagccaatgtcgggaaaatcgatgcc
ggcccgaagggcgccgtcatcaccttccgcgacaattccttcgctcatcccgaccgcctg
gtgacgttcatccgcagccacggccaggccgccaaggtgcgcccagacatgaaggtggtg
ttcctgcaggattgggagacgccggaagagcgcctcgtcggcacgacggagatcatgcgg
cagctggcgcagctcgcgacgagcaagaaagcggcgtga
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