Bradyrhizobium genosp. A: ACP2YP_22910
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Entry
ACP2YP_22910 CDS
T11253
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bgea Bradyrhizobium genosp. A
Pathway
bgea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACP2YP_22910 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgea03019
]
ACP2YP_22910 (rnr)
03016 Transfer RNA biogenesis [BR:
bgea03016
]
ACP2YP_22910 (rnr)
Enzymes [BR:
bgea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACP2YP_22910 (rnr)
Messenger RNA biogenesis [BR:
bgea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACP2YP_22910 (rnr)
Transfer RNA biogenesis [BR:
bgea03016
]
Prokaryotic type
tRNA degradation factors
ACP2YP_22910 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
XRZ33015
LinkDB
All DBs
Position
4913834..4916182
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AA seq
782 aa
AA seq
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MKRKNDHGFPDRSAIVAFIKAHPGKVGTREIAREFGLKNADRIELKRLLRELADDGTIKK
KRHTVSEPDSLPPTLVADITGRDSDGELIASPTEWDEVEGGEPPKIRIQMPRRPKPGTVA
GVRDRVLLRVEPTNETEGPAYRGHIIKVFDKAKSRILGVFRSLPEGGGRLVPVDKKSADR
ELNIAPAETQGAQDGDLVSVDIVRSRSFGLASGRVKEKLGSVKSEKAISLIAIYAHDIPL
QFSPAAEREAEAAEPANLKGREDWRDVPLVTIDPPDAKDHDDAVHAQADPDPNNKGGFIV
DVAIADVSFYVQPGTALDRDALDRGNSVYFPDRVVPMLPERISNNLCSLVPGEPRGALAV
RMIIAPDGRKRSHSFHRILMRSAAKLNYAQAQAAIDGRPDDTTGPLLDPILKPLYAAYAC
VKRARDERDPLNLDLPERKILLKSDGTVDRVVVPNRLDAHKLIEEFMILANVAAAEMLEK
KSLPLIYRVHDEPTLEKVHALAEFLETLDVPFAKAGALRPALFNRVLAQLEGHDHFPLVS
EVVLRAQAQAEYSAENYGHFGLNLRRYAHFTSPIRRYADLVVHRALVRALGLGEGALPDS
ETPESLGEVAAHISLTERRAMKAERETVDRLIAHHLADRIGASFQGRVSGVTRAGLFVKL
AETGADGLIPIRSLGTEYFNYDEGRHALVGTRSRTMYQLGDIVDVRLIEAAPIAGALRFE
LLSSSSETAPRDRRQPGPQRRPSFKAQPGRSPEKKHKPAKQKKSGKGKKAKNKGKGQKGK
AW
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacgcaagaatgaccatggctttcccgacaggagcgccatcgtcgccttcatcaag
gcacatccgggaaaggtcgggacccgcgagatcgcgcgcgagttcggcctgaagaacgcc
gatcgcatcgagctcaagcgcctgctgcgcgagctcgccgacgacggcaccatcaagaag
aaacgccacacggtctcagagccggacagcctgccgccgacgctggtcgccgacatcacc
ggccgcgactccgacggcgaattgatcgcctctcccaccgaatgggacgaggtcgaaggc
ggcgagccccccaaaatccgcatccagatgccgcgccggccgaagcccggtaccgtcgcc
ggcgtccgcgatcgcgtgctgctgcgcgtcgagccgaccaacgagaccgaaggtccggcc
tatcgcggccacatcataaaagtcttcgacaaggccaagagccgcatcctcggcgtgttc
cgcagcctgcccgaaggcggtggacggctcgtccccgtcgacaagaagtccgccgatcgc
gagctgaacatcgccccggccgagacgcaaggcgcccaggacggcgacctcgtcagcgtc
gacatcgtacgctcgcgcagctttggcctggcctcaggccgcgtgaaggagaagctcggt
tcggtcaagtcggagaaggcgatcagcctgatcgcgatctacgcccacgacatcccgctg
caattctcgccggccgcggagcgcgaagcggaagccgcggagcctgccaatctgaaaggg
cgcgaggactggcgcgacgtgccgctcgtcaccatcgatccgccggacgccaaggatcac
gacgacgcggtgcatgcgcaagccgatcccgatccgaacaacaagggcggtttcatcgtc
gacgtcgccatcgccgacgtgagtttttacgtgcagccgggcaccgcgctcgaccgcgac
gcactcgaccgcggcaactcggtctatttccccgaccgcgtcgtgccgatgctgccggag
cggatctccaacaatctctgctcgctggtgccgggcgagccacgcggcgcgctcgcggtg
cggatgatcattgcccctgacggacgcaagcgttcgcactcattccatcgcatcctgatg
cgctcggccgccaagctcaactatgcgcaggctcaggccgcgattgatggaaggcctgat
gataccaccggtcccctgctcgatccgatcctgaagccgctctatgccgcctacgcctgc
gtcaagcgcgcgcgcgacgaacgcgatccgctcaatctcgatctgcccgagcgcaagatc
ctgttgaagagcgacggcacggtcgatcgtgtcgtcgtgcctaacaggctcgacgcgcac
aagttgatcgaggaattcatgatcctcgccaacgtcgcggcggccgagatgctggagaag
aaatcgctcccgctgatctaccgcgtgcatgacgagccgacgctggaaaaagtccacgcg
ctcgcggaatttttggagacgctggacgtccccttcgccaaagcaggagcgctgcgcccc
gctctgttcaatcgcgtgctggcacagctcgaaggccacgaccatttcccgctggtgagc
gaggtcgtgctgcgcgcgcaggcgcaggccgagtactcggccgagaattacggtcatttc
ggcctgaacctgcgccgctacgcgcatttcacctcgccgatccgccgctacgccgacctc
gtcgtgcatcgcgcgctggtccgcgcgctcgggctcggcgaaggcgccctgcccgacagc
gagacgccggaatcgctcggcgaggtcgccgcgcatatttcgctgaccgagcggcgagcg
atgaaggccgagcgcgagaccgtcgatcgcctgatcgcccatcacctcgccgaccgcatc
ggcgccagcttccagggccgcgtctccggcgtcacccgcgccgggctctttgtcaaactc
gctgaaaccggcgccgacggattgatcccgatccgatcccttggcacggaatatttcaac
tatgacgagggccgccacgcgctggtcggcacgcgcagccgcaccatgtaccagctcggt
gacatcgtcgacgtccgcctgatagaggcagcccccatcgcgggtgcgctgcgttttgag
ctgctgtcgtcctccagcgagaccgcgccgcgcgaccgcaggcaacctggcccacaacgc
cggccctcgttcaaggcgcaacccggacgcagcccggagaagaagcacaagccggcgaag
cagaaaaagtccggcaagggtaagaaggcgaagaacaaaggcaagggacagaagggcaag
gcatggtga
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