KEGG   Bradyrhizobium genosp. A: ACP2YP_31375
Entry
ACP2YP_31375      CDS       T11253                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bgea  Bradyrhizobium genosp. A
Pathway
bgea03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bgea00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ACP2YP_31375 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bgea03400]
    ACP2YP_31375 (ligD)
Enzymes [BR:bgea01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ACP2YP_31375 (ligD)
DNA repair and recombination proteins [BR:bgea03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ACP2YP_31375 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: XRZ34584
LinkDB
Position
complement(6694251..6696926)
AA seq 891 aa
MLRKLSTYRQKRDFEKTPEPSGEAAVASSKQRRFVIQKHDATRLHYDFRLEFDGVFKSWA
VTKGPSLDPRDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESDDPEAGFK
KGDLKFTLHGEKLHGSWVLVRMRNDRSGGKRTNWLLIKHRDEYASEDEDILAEDKSVASG
RAMEQIAGGKGRAPKPFMLAKGTKSKADAVWQSNRAEETKGRTVKPAPRAALKSGKISKR
KATTATTARTVSEMPDFVAPQLCTPVERPPAADGWCHEIKFDGYRVQLRVQDGEATVKTR
KGLDWTDKFASIAKEAGALPEVLIDGEIVALDHNGAPNFSSLQAALSDGKTEDLIFFAFD
LLFAERLDYRRLPLGERKERLKELLEARKKKSSQIRYVEHFVSGGDAVLQSACKLELEGV
VSKKLDAPYRSGRTESWTKAKCRAGHEVVIGGYKTTNGKFRSLMAGVHRDDHLAFVGMVG
TGFGADTVKRIMPSLKAVEAKESPFGGKNAPKKTRDVHWLKPELVAEIEFAGFTADGNIR
QAAFKGLRQDKPAEEVEAETPADTELAKPSAGKRAVPKTSKPSKGAGTAEVMGVVISKPE
KELWPDGGDGEGVTKLDLARYFEAVGEWMIEHIKGRPCSILRAPDGIGGEKFFQRHAMQG
TSNLLELAKVSGDRKPYLQIDRIEGLAAVAQIGGVELHPWNCAPDAYDTPGRLVFDLDPA
PDVKFADVVEAAKEMRQRLTDVGMESFCKTTGGKGLHVVVPLLDGARDKVSWKEAKAFAQ
GVCQWMADDDPERYLLNMSKKLRNGKIFLDYLRNDRMSTAVAPLSPRARDGATTSMPLTW
AQVKGDLDPKKYTVRTVPGLLARSKAWEGYDDAASSIKAAVKKLAGKSRVG
NT seq 2676 nt   +upstreamnt  +downstreamnt
gtgctgcgaaaactttccacctatcgacagaagcgcgatttcgagaagacgccggagccg
tcaggcgaggctgcagttgcatcgtccaagcagcggcggttcgtgatccagaagcatgac
gcgacccggctgcattacgatttccgcctggaattcgacggcgtcttcaagtcctgggca
gtgaccaaggggccctcgctcgatccgcgcgacaagcggctggcggtggaggttgaggac
cacccgctcgactatggcgatttcgaagggacgattcccgaaggccaatatggcggtggc
acggtgatgctatgggaccgcggcacctgggaatccgatgatcccgaagccggtttcaaa
aagggcgacctcaagttcaccctgcacggcgagaagctgcacggaagctgggtgctggtg
cggatgcgcaacgatcgcagcggcggcaagcgcaccaattggctgctgatcaagcaccgc
gacgaatatgccagcgaggacgaggatatcctggcggaggacaagtcggtggcctccggc
cgcgctatggagcagattgccggcggcaagggccgcgcgccaaagccgttcatgctggca
aagggcaccaagagcaaggccgatgcggtctggcagtccaaccgtgccgaggagaccaaa
ggacggaccgtcaagccggcgcctcgcgcagcgttgaaaagcggaaaaatttcgaaaagg
aaggcgacgaccgcgacgacggccaggacggtctcggagatgccggacttcgtcgcgcca
cagctctgcacgccggtcgagcggccgcccgcggccgatggctggtgccacgagatcaag
ttcgacggctaccgcgtccagcttcgcgtccaggacggcgaagcgacggtgaagacgcgc
aagggcctcgactggaccgacaagttcgcttcgattgcgaaggaggccggtgcgctgcca
gaggtgctgatcgacggcgagatcgtcgcgctcgaccacaacggcgcgccgaatttttca
tcgctccaggccgcgctgtccgacggcaagaccgaggatttgatcttcttcgccttcgac
ctgctgtttgccgagagactcgactatcgccgtctgccgctcggcgagcgcaaggagcgc
ctcaaggagctccttgaagcacgcaagaagaaatccagccagatccgctatgttgagcat
ttcgtaagcggtggcgacgcggtgctgcaatcggcctgcaagctcgagcttgagggcgtg
gtgtcgaagaagctcgatgcgccgtatcgctcgggccgtaccgagagctggaccaaggca
aagtgccgggccgggcatgaggtcgtgatcggcggctacaagaccaccaatggtaaattc
cgctcgttgatggccggcgtgcatcgcgacgaccatctcgccttcgtcgggatggtcggc
accggatttggcgccgacacggtcaaacgcatcatgccgtcgctaaaagccgtggaggcc
aaggaaagtcctttcggcggcaagaatgcgcccaaaaagacccgcgacgtgcactggctg
aagcccgagctcgtcgcggagatcgaattcgccggcttcaccgccgacggcaacatccgc
caggccgcgttcaagggcctgcgccaggacaagccggccgaggaggtcgaggcggaaacg
cctgcggataccgaactggccaaaccttcggccgggaagcgcgccgtgcccaagacgagc
aagccctcgaagggcgccggcaccgccgaggtgatgggcgtcgtcatctccaagccggag
aaggagctatggcctgatggcggcgatggcgagggcgtcacgaagctcgatctcgcgcgc
tatttcgaagctgtcggcgagtggatgatcgaacatatcaagggccgcccctgctcgatc
ctgcgtgcgcccgacggaatcggcggtgaaaaattcttccagcgtcatgccatgcagggg
acctcgaacctgctcgaactcgccaaagtgtccggcgatcgcaagccgtatctccagatc
gaccgcatcgaagggctggccgcggtcgcgcagatcggcggtgtcgagctgcatccctgg
aattgcgcgcccgatgcctatgacacgccgggccggctggtgttcgacctcgatcccgcg
ccggacgtcaagttcgccgatgtcgtcgaagcggcgaaggagatgcgccagcggctcact
gacgttggcatggagagcttttgcaagaccaccggcggcaagggcctccatgtggtggtg
ccgctgctcgacggcgcgcgcgacaaggtgagttggaaggaggcaaaagcgttcgcgcag
ggcgtctgccagtggatggccgatgacgatcccgagcgctatctgctcaacatgtcgaag
aagctgcgcaacgggaagatttttttggattacctgcgcaacgaccgtatgtcgaccgca
gtggcgccactatcgccccgcgcccgcgatggcgcaaccacctcgatgccgctgacctgg
gcgcaggtgaagggcgatctcgatccgaagaagtacacagtgcggacggtgccaggcttg
ctggcgcgatcgaaggcgtgggagggctatgacgatgccgcctcatcgatcaaggcggcg
gtgaagaagctggcggggaaaagtagggtgggttag

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