Bradyrhizobium genosp. A: ACP2YP_32250
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Entry
ACP2YP_32250 CDS
T11253
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bgea Bradyrhizobium genosp. A
Pathway
bgea02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bgea00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACP2YP_32250 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bgea03021
]
ACP2YP_32250 (rpoD)
Transcription machinery [BR:
bgea03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACP2YP_32250 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
LPD39
MTR4-like_stalk
Motif
Other DBs
NCBI-ProteinID:
XRZ34751
LinkDB
All DBs
Position
complement(6865274..6867418)
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AA seq
714 aa
AA seq
DB search
MATKAKTLQAKDKEKDDKAADAPEKDSQDAPSPLLDLSDAAVKKMIKQAKKRGFVTFDQL
NEVLPSDQTSPEQIEDIMSMLSDMGINVTEADDSEGEEDKDEGGEDETDNELVEVTQKAV
TEVKKSEPGERTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQ
AIIIWRDELNEGKIFLRDIIDLEATYAGPDAKAGMNTAMIAGPNGENGEAPAEGGQAAAA
VGAPAHVAPPAAPPAPTPFRAAPVGGNVGEAEKDPAESAAEADMDEDDEFENQMSLAAIE
AELKPKVVEIFDKIADSYKKLRKLQEQDIQNQLQNESLSPHQERKYKKLKDEIIVEVKSL
RLNQARIDSLVEQLYDINKRLVSHEGRLMRLADSHGVAREDFLRNYTGSELDPRWLNRVS
KLSAKGWKNFVHHEKDRIKDLRHEVHQLAALTGLEIVEFRKIVHSVQKGEREARQAKKEM
VEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI
TRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKVRKVLK
IAKEPLSLETPVGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVL
RMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaaggcaaagacgctgcaggcgaaggacaaggaaaaagacgacaaggcagcg
gatgctccggagaaggattcccaggacgcgccctcgccgttgctcgatctgtccgacgca
gcagtgaagaagatgatcaagcaggccaagaagcgtggcttcgtgaccttcgatcagctc
aatgaagttttgccgtcagaccagacctcgccggagcagatcgaggacatcatgtccatg
ctctcggacatgggcatcaacgtcaccgaagccgacgattctgaaggcgaggaagacaag
gacgaaggcggcgaggacgagaccgacaacgaactcgtcgaggtcacgcagaaggccgtc
accgaggtcaagaagagcgagccgggcgaacgcaccgacgaccccgtgcgcatgtatctg
cgcgagatgggcacagtcgagctgctctcccgcgaaggcgaaatcgcgatcgccaagcgc
atcgaggccggccgcgaggcgatgatcgcagggctctgcgaaagcccgctgaccttccag
gccatcatcatctggcgcgacgagctcaacgaaggcaagatcttccttcgcgacatcatc
gatctcgaagcgacctatgccggccccgacgcgaaggccggcatgaacactgcgatgatc
gccggtcccaatggcgagaacggcgaagctccggccgagggcggccaggctgcagcggcc
gtgggtgcgcccgcgcatgtcgcgccgcccgccgctcccccggccccgaccccgttccgc
gccgcgcctgtcggcggcaatgtcggcgaggccgagaaggatcccgcggagtccgccgcc
gaagccgacatggacgaggacgacgagttcgagaaccagatgtcgctcgcggcgatcgag
gccgagctcaagccgaaggtcgtcgagatcttcgacaagatcgccgacagctacaagaag
ctgcgcaagcttcaggagcaggacatccagaaccagctccagaacgagtcgctctcgccg
caccaggagcgcaagtacaagaagctgaaggatgagatcatcgtcgaggtgaagtcgcta
cgcctcaaccaggcccgtatcgattcactggtcgagcagctctacgacatcaacaagcgc
ctcgtctcgcatgagggccgcctgatgcggctggccgacagccacggcgtcgcgcgcgaa
gactttctgcgcaactacaccggctcggagctcgatccgcgctggctcaaccgggtctcg
aagctttcggcaaaaggctggaagaatttcgttcaccacgagaaggaccgcatcaaggac
ctccgccacgaggtgcatcagcttgcggcgctgaccggcctcgagatcgtcgagttccgc
aagatcgtgcactccgtgcagaagggcgagcgcgaggcacgccaggccaagaaggagatg
gtggaagccaacctccgtctcgtgatctcgatcgcgaaaaagtacaccaaccgcggcctg
caattcctcgacctgatccaggaaggcaacatcggcctgatgaaggccgtcgacaagttc
gaatatcgccgcggttacaagttctcgacctacgccacttggtggatccggcaggcgatc
acccgctcgatcgccgaccaggcccgcaccatccgcatccccgtgcacatgatcgagacg
atcaacaagatcgtgcgcacgagccgccagatgctcaacgagatcggccgcgagccgacc
ccggaagagctcgccgaaaagctcggcatgcccttggagaaggtccgcaaggtcctcaaa
attgccaaggagccgctctcgctcgaaacgcccgtcggtgacgaagaggattcacatctc
ggcgatttcatcgaggacaagaacgcgatcctgccgatcgacgccgcgatccagtcgaac
ctgcgcgagaccaccacgcgcgtgctcgcctcgctcaccccgcgcgaagagcgcgtgctc
cgcatgcgcttcggcatcggcatgaacaccgatcacacgctggaagaagtcggccagcag
ttctcggtgacgcgcgaacgtattcgtcagatcgaagcgaaggcgctgcgcaagctgaag
cacccgtcgagaagccggaagctgcggagcttcttggataattga
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