Brevibacillus gelatini: AAFJ72_03400
Help
Entry
AAFJ72_03400 CDS
T11271
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bgel Brevibacillus gelatini
Brite
KEGG Orthology (KO) [BR:
bgel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bgel03009
]
AAFJ72_03400 (rlmD)
Enzymes [BR:
bgel01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
AAFJ72_03400 (rlmD)
Ribosome biogenesis [BR:
bgel03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
AAFJ72_03400 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_25
MTS
PrmA
Methyltransf_11
Methyltransf_23
Methyltransf_12
TPMT
Methyltransf_32
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
XVN71345
LinkDB
All DBs
Position
645524..646972
Genome browser
AA seq
482 aa
AA seq
DB search
MAKTTKKRRGPQQTAKVELDVPVRVGQTVEVEITGLNHEGAGVGRVEGYTLFVDGALAGE
RVLARVDHVKKNFGFAKLTKVLEASTHRAQPPCPLYDRCGGCSLQHLAYEEQLRHKQQIV
RDNLRRIGGFQVEGEGAITVHPTLGMTDPWRYRNKAQVPIGEENGALVGGFYAEKSHSII
DMNECLIQHQKNDEAVATVKRAAAPLGIKPYDEVRGTGLLRHVVVKVGVKTGEVMVVLVT
TEEAIPQRDKLVEAIRTEVAGVTSIVQNINPDKTNVIFGKKTVTLWGSDVIYDYIGPIKF
AISARSFYQVNPAQTEVLYNKTLEYAGATGTETVIDAYCGIGTISLFLAQKSKHVYGVEI
VPEAIADANRNAKLNDVDNATFEAGPAEVVIPAWKERGIRADVIVVDPPRKGCDEALLTT
ILEMQPERVVYVSCNPSTLARDLKVLAERYEVKEVQPVDMFPHTVHVECVGLLVQKETAV
CK
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaacaacaaaaaagcggcgcggaccgcagcagaccgccaaggtggagctggac
gtcccggtacgtgtcggtcaaaccgtggaagtggagataaccggactgaaccacgagggc
gctggagtcggccgggttgaaggatatacgctgtttgtagacggcgcactcgcaggcgag
cgagtccttgcgcgtgtcgaccatgtcaaaaagaactttggcttcgcgaagctgacgaaa
gtgctggaagcaagcacccaccgcgcacagccaccctgtccgctgtacgaccgttgcggc
ggctgttcgctgcagcacctcgcctacgaggaacaactgcggcacaagcagcagatcgtc
cgcgacaatctccgccgtatcggcggctttcaggtggagggagaaggggccattacggtg
cacccgacgctcggcatgaccgatccatggcgctaccgcaacaaggcacaggtgccaatc
ggcgaggaaaacggcgccttggtcggcggcttttacgcggaaaaatcccactccatcatc
gacatgaatgagtgcctcatccagcaccaaaagaacgacgaggcagtcgccaccgtgaag
cgagccgctgctccccttggcattaagccatacgacgaggtgcgcggcacaggtctgctg
cgccatgtggtcgtcaaggtaggggttaagacgggggaagtcatggtcgtgcttgtgacg
acagaggaagccattccgcagcgggacaagctcgtggaagcgatccgcacggaggtggca
ggcgtcaccagcatcgtgcaaaacatcaatccggacaagactaacgtcattttcggcaaa
aagaccgtgacactctggggcagcgacgtcatttacgattacatcggcccgatcaaattc
gcgatctcggcgcggtcgttttaccaggtcaaccctgcacagacggaagtgctgtacaac
aaaacgctggaatacgccggggcaacaggcacggaaacggtcatcgacgcctactgcggc
atcggcaccatctcgctgtttttggcgcagaagtcgaagcatgtgtacggcgtggagatc
gttccggaagcgattgcggatgcgaaccgcaacgccaagttgaacgacgtggacaacgcg
acgtttgaggctggcccggcagaggtcgtgattccggcgtggaaggagcggggcatccgc
gccgatgtgattgtggtcgacccgccgcgcaagggctgcgacgaggcgctgttgacgacg
attttggagatgcagccggagcgcgtggtgtacgtgtcgtgtaatccgtctacgttggca
agggatttgaaagtgctggcggagaggtatgaggtgaaggaagtgcagccggtggatatg
tttccgcatacggtgcatgtggagtgtgtggggttgttggtgcagaaagaaacagctgtc
tgtaagtga
DBGET
integrated database retrieval system
