Brevibacillus gelatini: AAFJ72_04275
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Entry
AAFJ72_04275 CDS
T11271
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bgel Brevibacillus gelatini
Brite
KEGG Orthology (KO) [BR:
bgel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bgel03009
]
AAFJ72_04275 (rlmD)
Enzymes [BR:
bgel01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
AAFJ72_04275 (rlmD)
Ribosome biogenesis [BR:
bgel03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
AAFJ72_04275 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
Cons_hypoth95
MTS
Methyltransf_11
Methyltransf_15
HVO_0513_N
Methyltransf_12
TRM5-TYW2_MTfase
N6_N4_Mtase
Methyltransf_32
PrmA
TPMT
PCMT
Motif
Other DBs
NCBI-ProteinID:
XVN71511
LinkDB
All DBs
Position
complement(825643..827034)
Genome browser
AA seq
463 aa
AA seq
DB search
MPTHKKEQEAMIRVGQQMTLTIKSLGINGEGIGYFKRKIVFVEGALPGEVVHAEVTEARE
KYATARLLRVVEKSSSRTVPPCPVYKECGGCSLQHMDYAAQLASKQEIVIESLRKYARLS
DPPVAPTIGMDNPWSYRNKAQFQVGKQNGKLIAGLYQAGSHRLVDLEGCLVQHEATTKIV
QAAKKIIEELGIPVYDERKRTGVIRTIVARVAFATGETQLTLVTATKEIPRVKELILELR
TRLPELVSIAQNVNPQKTSIVFGNQTISLWGRPSIAEKLGELSFDLSARAFFQLNPEQTK
KLYDEVKKAAALTGKELVLDLYCGTGTIGLWLAPYAREVRGIELIPEAVEDANRNAARNQ
ATNASFHTGRAEVLMPKWAKQGTRPDVVVVDPPRTGLDDALIRLLLDVQPKRIVYVSCNP
STLAKDVAKLLQRYEVVSVQPVDMFPHTQHVECCSLLVRKDQF
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgccaacacacaaaaaggaacaagaagcaatgatacgcgtcggccagcagatgacgctc
accataaaaagtctgggaatcaacggcgaaggaatcggctacttcaaacggaagatcgtc
ttcgtcgaaggcgctctccccggcgaggtcgtccatgccgaagtgacggaagcgcgggaa
aagtatgcaacagcccgcctgctgcgcgtcgtggaaaaatcctcctcgcgcaccgtcccg
ccctgtccggtctacaaggaatgcggcggctgcagcctgcagcacatggactatgcggca
cagcttgccagcaagcaggaaattgtcattgagtctctgcgcaaatacgcccgcctgtcc
gatccccccgtcgccccgaccatcgggatggacaatccgtggtcgtaccgcaacaaggcg
cagttccaggtgggcaagcaaaacggcaagctcatcgccggactgtaccaggcaggcagc
cacaggctcgtcgatctggaaggctgcctggtgcagcacgaggcgacgaccaaaatcgtg
caagccgcgaaaaaaattatcgaggaactgggcatccctgtttacgacgagcgcaaacgt
acaggtgtcattcgcacaatcgtggcgcgggtggcttttgccacaggggaaacacaactg
acactggtaacagctaccaaggaaattcctcgcgtcaaggaactgattctggaactgcgc
acacgcctgccggagcttgtcagcatcgcgcaaaacgtaaatccgcaaaaaacgtcgatc
gtcttcggcaaccagacgatctccctgtggggcagaccttccatcgcggaaaagctcggg
gagctgtcgtttgatttgtcggcacgcgccttttttcaactgaacccagagcagacgaaa
aagctgtacgacgaggtgaaaaaagccgcagccttgacgggcaaggagctcgtcctcgac
ctgtactgcggcacgggcacgatcggcctgtggctcgcgccctacgcccgcgaagtacgc
ggcatcgaactgatcccggaagccgtcgaggacgcaaaccgcaacgcggcacgcaaccag
gcgacaaacgcaagcttccacacaggccgcgccgaggtactgatgccaaaatgggccaag
caaggcacgcgcccggatgtcgtcgtcgtcgacccgccacgcaccgggctggatgatgcg
ctgattcggttgcttttggatgtgcagccgaagcggattgtgtatgtgtcgtgtaatccg
tcgacattggcgaaggacgtggcgaaattgttgcagcggtatgaggtggttagtgtgcag
ccggtggatatgtttccgcatactcagcatgtggagtgttgttcactgttggtgaggaag
gaccaattctga
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