Bradyrhizobium genosp. P: ACP2YO_21935
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Entry
ACP2YO_21935 CDS
T11254
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bgep Bradyrhizobium genosp. P
Pathway
bgep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACP2YO_21935 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgep03019
]
ACP2YO_21935 (rnr)
03016 Transfer RNA biogenesis [BR:
bgep03016
]
ACP2YO_21935 (rnr)
Enzymes [BR:
bgep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACP2YO_21935 (rnr)
Messenger RNA biogenesis [BR:
bgep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACP2YO_21935 (rnr)
Transfer RNA biogenesis [BR:
bgep03016
]
Prokaryotic type
tRNA degradation factors
ACP2YO_21935 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
XRZ31414
LinkDB
All DBs
Position
complement(4549433..4551805)
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AA seq
790 aa
AA seq
DB search
MKPKHDHGFPARDAIVAFIRANPGKVGTREIAREFGLKNADRAELKKILRELADDGTVAK
RGRNILQPAALPPTVLADITGRDSDGELIATPAEWDTEDSGPAPKIRIETPRRPKPGTAA
GVGDRALLRVDVSDESDGTPYRGRVIKVIDHARSRILGIFRRNPDGSGRLIPVDKKQAGR
ELNIATSDTGGAEDGDLVSVDLVRSRGYGLGSGRVKDRLGSLSSEKAISLIAIHAHDIPQ
VFSPAAISESEEAEPATLQGREDWRDVPLVTIDPPDAKDHDDAVHAEVDGDPNNKGGYIV
HVAIADVAFYVRPGSALDRDALLRGNSVYFPDRVVPMLPERISNNLCSLVPGEPRGALAV
RMVIGADGRKRSHTFHRVLMRSAAKLSYAQAQAAIDGRPDDTTGPLLDPILKPLWTAYEL
VKLARNERDPLDLDLPERKILLKPDGTVDRVVVPQRLDAHRLIEEFMILANVAAAEMLEK
KNLPLIYRVHDEPSQEKVHNLQEFLKTLDLPFTKSGALRPAQFNRVLAQVSGEDYEPLVN
EVVLRSQAQAEYSAENYGHFGLNLRRYAHFTSPIRRYADLIVHRALIRALGLGEGALPPD
ESVETLAEIAAQISVTERRAMKAERETSDRLIAHFLADRIGASFQGRISGVTRAGLFVKL
DDTGADGLIPIRTIGSEYFNYDETRHALIGSRSGVMYRLGDVVDVRLVEAAPVAGALRFE
LLSEGQAIPRGGRRGRDGARSERRVTGPAKGFAKEFTGGSAKPHPEKKAHSNKKGRKPAK
QKSGKSKRGK
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaccaaaacacgaccatggctttccggcccgggacgccatcgtcgcattcatccgc
gccaatccaggcaaggtcggcacccgcgagatcgcccgcgagttcggcctgaagaacgcc
gaccgcgccgagctgaagaagattctgcgcgagctcgccgacgacggcacggtcgccaaa
cgcggccgcaatatcctccagccggccgcactgcccccgaccgtgcttgccgacatcacc
ggccgcgacagcgacggcgaattgattgccacccccgccgagtgggacaccgaagacagc
ggccccgcgcccaagatccgcatcgagacgccgcggcgcccgaagcccggcaccgcagcc
ggggtgggcgaccgcgcgctgttgcgggtcgatgtatcggacgaaagcgacggtacgccc
tatcgcggccgcgtcatcaaggtcatcgaccacgcccgcagccgcattctcggcatcttc
cgccgcaaccctgacggcagcggacggctgatcccggtcgacaagaaacaggccggccgc
gaactcaacatcgccacatcagataccggcggcgcggaggatggcgatctcgtcagcgtc
gacctggtgcgcagccgcggctacgggcttggctccggccgcgtcaaggatcgcctcggc
tcgctgtcgagcgagaaggcgatcagcctgatcgcgattcacgcccacgacattccgcag
gtgttctcacccgcagctatcagcgagtccgaagaggcagaacccgcaacgctgcaaggc
cgcgaggattggcgcgacgtgccgctcgtcaccatcgatccgcccgacgccaaggatcat
gacgacgccgtgcatgcggaggtggacggcgatccgaacaacaagggcggctatatcgtc
catgtcgcgatcgccgatgtcgccttctatgtgcggccgggctcggcgctcgaccgcgac
gcgctcctgcgcggcaactcggtctatttccccgatcgcgtcgtgccgatgctgccggag
cgcatctccaacaatctgtgctcgctggtgcccggcgagccgcgcggcgcgctcgcggtg
cgcatggtcatcggggccgacggccgcaagcgctcgcataccttccatcgagtgctgatg
cgctcggctgcgaaactcagctacgcgcaggcgcaggccgcgatcgacggcaggcccgat
gacaccaccggtcccctgctcgatccgatcctgaaaccactttggacggcctacgagctg
gtcaagctcgcacgcaacgagcgcgacccgctcgatctcgatctgcccgagcgcaagatc
ctgctgaagcccgacggcaccgtcgatcgcgtggtggtgccgcagcggcttgatgcgcac
cggctgatcgaggagttcatgatcctcgccaacgtcgccgcggccgaaatgctggagaag
aagaatctcccgctgatctaccgcgtgcacgacgagccgagccaggagaaggtccacaat
ctccaggaatttttgaaaacgctcgatctgcccttcaccaaatcgggcgcgctgcggccc
gcgcagttcaatcgcgtgctggcgcaggtctcgggcgaggactacgagccgctggtcaac
gaggtggtgctgcgctcgcaggcgcaagccgaatattccgccgagaactacggccatttc
ggcttgaacctgcgccgctacgcgcatttcacctcgccgatccgccgctacgccgatctg
atcgtgcatcgcgcgctgatccgtgccttgggcctcggcgaaggcgcgctgccaccggac
gaatccgtggagacccttgccgagattgcggcgcaaatatccgtcaccgagcgccgcgcc
atgaaggcggaacgcgagacctccgatcggttgatcgcgcatttcctggccgaccgcatc
ggcgcgtcgttccagggtcgcatctccggcgtgacccgcgccggcctgttcgtgaagctc
gatgataccggcgccgacggactgatcccgatccgcaccatcgggagcgaatatttcaac
tatgacgaaacccgccatgcgctgatcggctcgcgcagcggcgtcatgtaccggctcggc
gacgtcgtcgacgtgcgtctggtcgaggccgcgcccgtagccggcgcgctgcggtttgag
ctattatccgaaggtcaggccattccgcgtggcggaagacgcggacgcgatggcgcaagg
tccgagcggcgtgtcacgggacctgccaaaggatttgccaaggaatttaccgggggatcc
gccaagccgcatccggaaaagaaagcgcatagcaacaagaagggccgcaagccggcgaag
caaaagtccggcaaatccaaacgaggcaaatga
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