Bradyrhizobium genosp. P: ACP2YO_27305
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Entry
ACP2YO_27305 CDS
T11254
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bgep Bradyrhizobium genosp. P
Brite
KEGG Orthology (KO) [BR:
bgep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bgep03016
]
ACP2YO_27305
Enzymes [BR:
bgep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACP2YO_27305
Transfer RNA biogenesis [BR:
bgep03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACP2YO_27305
Prokaryotic type
tRNA splicing ligases
ACP2YO_27305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
HTH_17
Motif
Other DBs
NCBI-ProteinID:
XRZ23875
LinkDB
All DBs
Position
5628011..5629351
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AA seq
446 aa
AA seq
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MRRADPYQERARELCLAAGVDPDSRVGEGRGQPAWCLYRDAARKEKLAREADAASAEIAM
LRQQEERFKNAPMKVFGEHDAATIAQMRNCMAVGNVVSGVICADGHLGYAQPVGGVIAYE
KQISISGVGFDIGCGNMAARLDVRFDDISAIAPTIIRDVAKVISFGIGRRNVETVEHALF
DDGDAWRESDMEAYRQKAVGQLGTVGSGNHYVDLMRDEAGFVWIGVHFGSRGLGHTSATR
YLKAAGGKDGMNVPPAIVDEDSELGRRYIAAMQLAGRYSYAGREWVVERVRRIIGGQVTE
SVHNHHNYAWRETHGGKDLWVVRKGATPAFPGQKGFVGGSMGDDAVILEGVDSPEAKASL
YSTVHGAGRLFGRNEAKRRFTREEMDRWLNERGVTLIGADLDESPMAYRRLPDVLAQHAG
TVKVLHTLRPFAVAMAGEGEFDPFKD
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgcgacgagctgatccctatcaggaacgtgcccgcgagctctgcctcgctgccggcgtt
gatccggattcccgtgtcggcgaaggccgcggccagccggcctggtgcctgtatcgcgat
gctgcccgcaaggagaagctggcgcgcgaggccgatgcggcctccgccgagatcgcgatg
ctgcgccagcaggaagagcgtttcaagaacgcgccgatgaaggtgttcggcgaacacgac
gcggcgaccatcgcgcagatgcgtaactgcatggcggtcggcaatgtcgtgtccggcgtg
atctgcgcggacggccacctcggctacgcccagcctgtcggcggcgtgattgcctatgag
aagcagatcagcatctccggcgtcggattcgacatcggttgcggcaacatggccgcgcgg
ctcgacgtccgcttcgacgacatcagtgcgatcgccccgacgatcattcgcgacgttgcg
aaggtgatttccttcggcatcggccgaagaaacgtcgagacggtggagcacgcgctgttc
gacgatggcgacgcgtggcgcgagagcgacatggaggcgtatcgacagaaggccgtcggc
cagctcggcacggtcggctccgggaaccactatgtcgacctgatgcgtgacgaggccggt
ttcgtctggatcggcgtccatttcggaagccgcggactcgggcacaccagcgcgacccgc
tacctcaaggctgccggcggcaaggatgggatgaatgtcccgcccgcgatcgtcgacgag
gattccgaactcgggcgtcgctacatcgcggcgatgcagctcgcgggccgatactcctat
gccggccgcgaatgggtcgtggagcgggttcgccggatcatcggcggacaggtgaccgag
tccgtgcacaaccaccacaactacgcctggcgggaaacgcatggcggcaaggacctgtgg
gtggtgcgcaagggcgcaacgccggcctttcccggtcagaagggattcgtcggcgggtcg
atgggcgatgatgccgtcattctcgagggcgtcgatagtccggaagccaaggcctcgctg
tactcgaccgtgcacggcgccggccggttgttcggccgcaatgaagcgaagcgccggttc
acgcgcgaggagatggaccgatggctgaacgagcgcggcgtcaccctgatcggcgccgat
ctcgacgaaagcccgatggcctatcggcgcctgcccgacgtgctcgcccagcacgccgga
acggtgaaggtgctgcacacgttgcggccctttgccgtcgcgatggcgggtgaaggcgag
ttcgatccattcaaggactag
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