KEGG   Bradyrhizobium genosp. P: ACP2YO_38935
Entry
ACP2YO_38935      CDS       T11254                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bgep  Bradyrhizobium genosp. P
Pathway
bgep03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bgep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ACP2YO_38935 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bgep03400]
    ACP2YO_38935 (ligD)
Enzymes [BR:bgep01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ACP2YO_38935 (ligD)
DNA repair and recombination proteins [BR:bgep03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ACP2YO_38935 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M
Other DBs
NCBI-ProteinID: XRZ25991
LinkDB
Position
complement(8110628..8113291)
AA seq 887 aa
MRGGCRLRRGLQLSLRNLSTYRKKRDFEKTDEPSGDLKVAPAKQRRFVIQKHDATRLHYD
LRLEFDGVFKSWAVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPENQYGGGTVQLWDR
GYWESDDPERGFKKGDLKFTLKGEKLHGSWVLVRMKGDRFGGKRTNWLLIKHRDDYAVDG
DGAEILEEDRSVASGRPMAQIAAGKGRAPKPFMLAKGTGKAKADAVWHSNRGEAAEARAK
VKAPPPKARPAARPKQVSEMPDFVSPQLCASVDSPPNGAGWCHEIKFDGYRVQLRVEDGE
AVLKTRKGLDWTDKFGAIAAEAGKLPDALIDGEIVALNEGGVPDFSTLQAAISDAKTNKL
IFFAFDLLFAGKEDLRSLPLAERKAHLKQLLEARRGKELLIRYVEHFEENGETVLESARK
LALEGIVSKMLEGPYRSGRSDDWTKAKIRAGHEVVLGGWKTTDGKFRSLMAGVYRGSHLA
FVGIVGTGFGQDTVRRIMPALKAAASDKSPFGGKDAPKKTRDVHWLKPELVAEIEFAGWT
DGGNIRQAAFKGLRQDKPAREVEAEKPVVTKVVKPMARSTAKGAGKTSGEVMGVVISHPD
KALWPDAGDGEVVTKLDLARYFETVGEWMLGYLKGRPCSIVRAPDGIKGETFFQRHAMAG
TSKLLKLAKVSGDRKPYLQIDQIEGLAAVAQLGGLELHPWNCAPDAYDTPGRLVFDLDPA
PDVGFAEVIEAAKDMRQRLTVVGLESFCKTTGGKGLHVVTPLLHGAKDKVTWKEAKAFAQ
AICQWMAQDDPERYLLNMSKAKRTGKIFLDYLRNDRMSTAVAVLSPRAREGATVSMPLTW
TQVRGDLDPKKYTIRTVPALLAKTKAWDGYDDAATSIKTAMKKLAAQ
NT seq 2664 nt   +upstreamnt  +downstreamnt
atgcgcggcggttgtcgtttgcgccgaggcttgcaattgtcgctgagaaacctgtctacc
tatcgcaagaagcgcgatttcgagaagaccgatgaaccgtcgggcgacctcaaagtcgcg
ccggcgaagcagcggcggtttgtgatccagaagcacgacgcgacccggctgcactacgat
ctgaggctcgaattcgacggcgtcttcaaatcatgggcggtgacgcgcggtccctcgctc
gatccgcatgacaaacggctcgcggttgaggtggaggatcatccgctcgactatggcgat
ttcgaaggcacgattccggaaaaccagtatggcggcggcacggtgcagctctgggaccgc
ggctattgggaatccgatgaccccgaacgcggcttcaagaagggcgacttgaagttcacg
cttaagggcgagaagctgcatggcagctgggtgctggtgcggatgaaaggcgaccgcttt
ggcggcaagcgcaccaactggctgctgatcaagcaccgcgacgactatgccgtggacggc
gacggcgccgagatccttgaggaggaccgctcggtcgcctccggccgtccgatggcgcag
atcgcggctggcaagggccgggcgccaaagccgttcatgctggccaagggcactggcaaa
gcgaaggccgacgccgtctggcattccaatcgcggggaagccgccgaggcgcgcgccaag
gtcaaggctccgccgcccaaggcgcggccggcggcgaggccgaaacaagtgtcggagatg
ccggatttcgtcagcccgcaactctgcgcgtcggtcgacagcccgccgaatggagcgggc
tggtgccatgagatcaagttcgacggctaccgggtccagctccgcgtcgaggacggcgag
gcggtgctgaagacgcgcaaggggctcgattggaccgacaagtttggtgcgatcgcggcc
gaggccggcaagctgccggacgccctgatcgatggcgagatcgtcgcgctcaacgaagga
ggcgttccggatttctcgacgttgcaggcggccatctccgacgccaagaccaacaagttg
atcttcttcgccttcgatctgttgtttgccggcaaggaggatctgcgctcgctgccgctt
gccgagcgcaaggcgcatttgaagcaattgctcgaggcgcgcaggggcaaggagctgctg
atccgctatgtcgagcatttcgaggagaacggcgagactgtgctggaatcggcacgcaaa
ctcgcgctggaaggcatcgtctccaagatgctggaggggccttaccgctctggccgttcc
gacgactggaccaaagcgaaaatccgcgccgggcatgaggtggtgctcggtggctggaag
actactgacggcaaattccgttcgttgatggccggtgtctatcgcggcagtcatctggcc
tttgtcggcatcgtcggcaccggtttcggccaggatacagtgaggcgcatcatgccggcg
ctgaaggcggcggcgtctgacaagagcccgttcggcggcaaggacgcgccgaagaagacc
cgcgacgtgcattggctgaagccggagctggtcgccgagatcgaattcgcgggatggacc
gacggcggcaatatccgccaggccgcgttcaagggcctgcgccaggacaagcccgcgcgc
gaggtcgaagccgagaagcccgtcgtaaccaaggtggtgaagccgatggccagaagcacg
gcaaagggtgcggggaagacgtccggcgaggtgatgggcgtcgtcatctcccatccggac
aaggcactgtggcccgatgcgggcgacggcgaggtggtcacaaaactcgacctcgcaagg
tatttcgagacggtcggcgaatggatgctcggctacctcaaggggcggccgtgctcgatc
gtgcgcgcacccgacggcatcaagggcgagaccttctttcagcgccacgccatggccggc
acgtcgaagctattgaaactcgccaaggtctcgggcgaccgcaaaccctatctgcagatc
gaccagatcgaggggctggcagcggtcgcgcagctcggcgggctcgagctgcatccgtgg
aattgcgcgcccgatgcgtacgacacgccgggccggctggtgttcgacctcgatcccgcg
cccgacgtcggatttgccgaggtgatcgaggccgccaaggacatgcgccagcgcctgacc
gtggtcgggctcgaaagcttttgcaagaccaccggcggcaagggccttcacgtcgtcacg
ccgttgctccacggcgcgaaagacaaggtaacgtggaaggaggccaaggccttcgcgcaa
gcgatctgccagtggatggcgcaggacgaccccgagcgctatctgctcaacatgtccaag
gccaagcgcaccggaaagatattcctcgactatctgcgcaacgatcggatgtcgaccgcg
gtcgcagtgctgtcgccgcgtgcgcgcgagggtgccacggtgtcgatgccgctgacctgg
acccaggtccgcggcgatctcgatccgaagaaatacaccatccgcaccgtgccagcgctg
ctggcgaagaccaaggcctgggacggttacgacgatgcggcgacgtcgatcaagacggcg
atgaagaaactcgctgcgcagtaa

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