KEGG   Burkholderia sp. CCGE1003: BC1003_3798
Entry
BC1003_3798       CDS       T01314                                 
Name
(GenBank) DEAD/H associated domain protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
bgf  Burkholderia sp. CCGE1003
Brite
KEGG Orthology (KO) [BR:bgf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bgf03400]
    BC1003_3798
Enzymes [BR:bgf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BC1003_3798
    5.6.2.6  RNA 3'-5' helicase
     BC1003_3798
DNA repair and recombination proteins [BR:bgf03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    BC1003_3798
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD WH4_Lhr Helicase_C WH3_Lhr Cas3-like_C_2 ResIII TrmB GntR MarR_2 HTH_IclR AAA_22 DUF6196 MarR PhoH
Other DBs
NCBI-ProteinID: ADN59737
UniProt: E1TJB7
LinkDB
Position
2:310325..314896
AA seq 1523 aa
MPAPPATSAAPTTLAAPAVPTTPALPAAQNSHAALANFHPAVAGWFLKTFPAPTDAQTAA
WPSIRQGRSTLVAAPTGSGKTLTAFLSALDDLVQQGLASNGALPDETLVVYVSPLKALSN
DIRLNLQVPLQGIAAELAARGLPPLDIRTAVRTGDTTQQERNALKKRAPHILVTTPESLY
VLLGSDSGRRMLATVRTVIVDEIHALAGSKRGSHLALSLERLDALCGRRLPRIGLSATQK
PVSAVARFLVGGASVDSEIAADCAIVDVGHIRARDLALEIPPVPLEAVMPNEVWERVYDR
LAELVALHRTTLVFVNTRRMAERAARHLTERLGKEAVAAHHGSLAREHRFDAEQRLKRGE
LRVLIATASLELGIDIGDVDLVCQMGSPRAIAPFLQRVGRSGHHVGGMPKGRLFPTSRDD
LIECAALLDCVRRGELDALRIPRAPLDVLAQQIVAEVSCAEWSEDALFELVRRAAPYAEL
AREQYDAVLRMLAEGYTSRNGPRAAYIHRDVVSGTLRGRRGGKLVAVTSGGTIPENADYA
VVLEPQAINIGTVNEDFAVESLAGDVFQLGNASYRILRIESGRVRVEDAQGQPPNIPFWL
GEAPGRSDELSFGVARLRAQIGRLLGGDSGDLGSAAGSAHSASSAHSADPAGPDNSPLPA
AMPARLERAIDWLVAELGLDEAAARQIVEYLARARAALGVLPTQDTLVMERFFDESGGTQ
LVIHAPFGSRVNRAWGLALRKRFCRQFNFELQAAATEDAIVLSLTGSHSFVLDEVWRYLH
SASAERLLIQALLDAPLFGVRWRWNATTALGLPRYTGGRKTAPQLQRMRSEDLLTSVFPE
QAACLENVVGERELPRHPLVDQTVDDCLHDAMDSERWLALLRRIESGDVRLVARDLPAPS
PLAAEILNAKPYAYLDDAPIEERRTQAVLNRRWSDPSSADDLGALDPDAIASVRDEAWPQ
ARSVDEMHEALTGLACVTEAEARDNEGWLEWLAALAQSGRATRLAIAADAALWLPVERLT
CFAALYPDTNGARFAPPLAAPKGYTNEWSAEDALLDVLRARLTGFGPLPASAIADALRLP
QTAVDEALVRLEAEGYVMRGRFTAQTTDDEWCERHLLARIHRYTVKRLRREIEPVERHDF
MRFLFEWQHLTPDTRSEGRDALAAVLQQLEGFEAAASAWEEDILPARVKAYSNTSLDELC
RAGKIVWTRLTERSRSAAAPVRGTPIVLLPRAQVRVWSALIDPARQPELSARAQSVHDAL
AEHGAMFFDELLHELRILRIELENALGELVAAGLVNSDSFAGLRALLKPAAKRNAYAGSR
RARSTALIGGMDDAGRWALVNRRGSMAASAQSGDVAKDGQRSAQTPRQLPPEILEHVAMT
LLRRYGVVFWRLLAREADWLPPWRDLLRVYQRLEARGVIRGGRFVNGLAGEQFALPEAIP
LLREVRRHANDSAFVCVAGTDPLNLASTLLVGERVPAVAGNRVLYRDGIVVATLAAGAFW
FDASVEADPLERERARSFLTRRF
NT seq 4572 nt   +upstreamnt  +downstreamnt
gtgcctgctccacctgccacaagcgccgcgcctaccacgctcgccgcgcccgccgtgccg
accacgcccgccctgcccgccgcgcagaactcgcacgccgcactggcgaacttccacccc
gccgtggccggctggttcctgaaaactttccccgcgcccaccgacgcgcaaaccgccgcg
tggccgtccatccgtcaggggcgctcgacgctcgtcgccgcgcccacgggttccggtaaa
acgctcaccgcatttctgtcggcactcgacgatctggtccagcaaggtctcgccagcaat
ggcgccttgcccgacgaaacgctggtggtctatgtgtcgccgctcaaggcgctgtccaac
gacatccggctcaatctgcaggttccgctgcaaggcatcgccgcggaactcgcggcgcgc
gggctgccgccgctcgacatccgcacggccgttcgcactggcgacaccacgcaacaggag
cgcaacgcgctcaaaaagcgcgcgccgcatattctcgtcaccacgcccgaatcgctgtac
gtgctgctcggctcggactctggccggcgcatgctggccacggtgcgcacggtgatcgtc
gacgaaattcatgcgcttgccggcagcaagcgcggcagccatctcgcgctcagcctggag
cggctcgacgcgttgtgcgggcggcgtctgccgcgcatcggcctgtccgcgacgcaaaaa
ccggtgagcgcggttgcacgatttctcgtaggaggcgcgagcgtcgacagcgaaattgcg
gccgactgcgcgattgtcgacgtgggccacatccgcgcgcgcgaccttgcgctcgaaatt
ccgccggtgccgcttgaagccgtcatgccgaacgaagtgtgggagcgcgtctacgaccgg
ctggcggaactggtcgcgctgcatcgcacgacactcgttttcgtcaacacacgccgcatg
gccgaacgcgccgcgcgacatctgaccgagcggctcggcaaggaagccgtcgccgcgcat
cacggcagccttgcgcgcgagcatcgtttcgacgcggagcagcggctcaagcgcggcgaa
ctgcgggtgctgatcgccactgcgtcgcttgaactaggcattgatatcggcgacgtcgat
ctggtctgccagatgggttcgccgcgcgcgatcgcgccgttcctgcaacgcgtcgggcgt
tcgggccaccatgtcggcggcatgccgaaaggccggctctttcccacttcgcgcgacgac
ctgatcgaatgcgcggcgctgctcgattgcgtgcggcgtggcgaactcgacgcgctgcgc
attccgcgcgcgccgctcgacgtgctcgcgcaacagatcgtcgcggaggtgtcctgcgcc
gagtggagcgaagacgcgctcttcgagttggtgcgccgcgcggcgccctacgcggagctc
gcgcgcgagcaatacgacgccgtgctgcgcatgctcgccgaaggctacacgagccgcaac
gggccgcgcgccgcctatatccatcgcgacgtggtgagcggcacgctgcgcggccggcgc
ggcggcaagctggtggcggtcacctcgggcggcacgattcccgagaacgccgactacgcg
gtcgtgctcgagcctcaggcgatcaacattggcaccgtcaacgaagacttcgcggtggaa
agtctcgcgggcgacgtgtttcagctcggcaacgcgtcgtaccgcattctgcggatcgaa
agcggacgggtgcgtgtggaggatgcacagggccagccgcccaacatcccgttctggctc
ggcgaggcgccgggccgaagcgacgagttgtcgttcggggtggcgcggctgcgggcgcag
atcgggcggttgctgggtggtgatagcggcgatctcggcagtgcggccggttctgcccac
agcgccagttctgcccacagcgccgatccagccggtccggacaactccccgctccccgcc
gccatgcccgcgcgtctcgaacgcgcgatcgactggctcgtcgccgaactcgggctcgac
gaagccgcggcgcgtcagatcgtcgagtatcttgcgcgcgcccgcgcggcgctcggcgtg
ctgccgacgcaggacacgctcgtcatggagcgttttttcgacgaatccggcggcacgcag
ctcgtcattcacgctccgttcggcagccgcgtgaaccgcgcgtggggcctcgcgctgcgc
aagcgcttttgccgtcagttcaacttcgaactgcaagcggccgccaccgaggatgcaatc
gtgctctcgctgaccggcagccactcgttcgtgctcgacgaagtgtggcgctatctgcat
tccgcgagcgccgaacggctgctgatccaggcgctgctcgacgcaccgctgttcggcgtg
cgctggcgctggaacgcgaccaccgcgctcggcctgccgcgctacaccggcgggcgcaaa
acggcgccgcaattgcagcgcatgcgcagcgaggatctgctgacgagcgtgttccccgag
caggccgcgtgtctggagaacgtggtcggcgagcgcgaactgccgcgtcacccgctcgtc
gatcagaccgtcgacgactgcctgcacgacgcgatggacagcgaacgctggctcgcgctg
ctgcgccgtatcgaaagcggcgacgtacgactcgtggcgcgcgatctgccggcgccctcg
ccgctcgccgccgaaatcctcaacgcgaagccctacgcttatctcgacgacgcgccgatt
gaagagcgccgcacgcaggcggtgctgaaccgccgctggagcgatccgtcaagtgccgac
gacctcggtgcgctcgaccccgacgcgattgccagcgtgcgcgacgaagcgtggccgcag
gcacgcagtgtcgacgaaatgcacgaggcgctcacgggcctcgcgtgcgtgaccgaagcc
gaggcgcgcgacaacgaaggttggctggaatggctcgccgcgcttgcgcaatcgggccgc
gcgacgcgcctcgccattgccgccgatgcggcgctgtggctgcccgtcgagcgcctgacc
tgcttcgccgcgctgtatccggacacgaacggcgcgcgctttgcgccgccgctcgccgcg
ccgaagggctacacgaacgaatggagcgcagaggacgcgctgctcgatgtgctccgcgcg
cggctgacaggcttcggcccattgccggccagcgcgattgcagacgcgttgaggctaccg
cagacagccgtggacgaagcgcttgtgcgcctcgaagcggaaggctacgtgatgcgcggc
cgtttcactgcgcaaaccaccgacgacgaatggtgcgagcggcacctgctggcgcggatt
caccgctataccgtcaagcgcctgcgccgcgagatcgaaccggtggaacgccacgacttc
atgcgctttctgttcgagtggcagcacctgacgccggacacgcgcagcgaaggccgcgac
gcgcttgcggccgtgctgcaacagctggaaggcttcgaagccgcggccagcgcctgggag
gaagacatcctgcccgcgcgcgtgaaggcctattcgaatacttcgctcgacgaactatgc
cgggcgggcaagattgtctggacgcgtctgaccgaacgttcgcgcagcgccgcggctcct
gtgcgcggcaccccaatcgtcctgttgccgcgcgcccaggtgcgcgtgtggagcgcgctg
atcgacccggcgcgtcagcctgaactctcggcgcgcgcgcaatcggttcacgacgcgctg
gccgaacacggcgcgatgttcttcgacgaactgctgcacgaacttcgcatactgcgtatc
gaactggaaaacgccctcggtgaactggtggcggccggtctcgtgaactcggacagtttc
gcgggcctgcgcgcactgctcaagccggccgccaaacgcaatgcgtacgcgggtagccgc
cgcgcgcgctcgacggcgttgatcggcggaatggacgacgccgggcgctgggcgctcgtg
aaccgacgcggctcgatggccgcaagcgcgcaatccggcgacgtcgcaaaagacgggcag
cggtccgcacaaacgcctcgccagttgccgcccgaaattctggaacatgtcgcgatgacg
ttgctgcggcgctacggcgtcgtgttctggcggctgcttgcgcgcgaagccgactggctg
ccgccgtggcgcgatctgctgcgcgtgtatcagcggctcgaagcgcgcggcgtgattcgc
ggcggacgcttcgtcaacggactggccggcgagcagttcgcattgcccgaagcaataccc
ttgctgcgcgaagtccgcagacatgcgaacgatagtgcttttgtgtgcgtcgccggcacc
gatccgttgaatctcgccagcacgctgctggtgggcgaacgcgtgccggcggtggccggc
aaccgcgtgctgtatcgcgacggcattgtcgtcgccacactcgcggcgggtgcattctgg
ttcgacgcgtccgtcgaggccgatccgctcgaacgcgagcgcgcgcgcagttttctcacg
cgccggttctag

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