Burkholderia sp. CCGE1003: BC1003_4067
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Entry
BC1003_4067 CDS
T01314
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bgf
Burkholderia sp. CCGE1003
Pathway
bgf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BC1003_4067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgf03019
]
BC1003_4067
03400 DNA repair and recombination proteins [BR:
bgf03400
]
BC1003_4067
Enzymes [BR:
bgf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BC1003_4067
Messenger RNA biogenesis [BR:
bgf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BC1003_4067
DNA repair and recombination proteins [BR:
bgf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BC1003_4067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
AAA_30
Phage_Gene47
Motif
Other DBs
NCBI-ProteinID:
ADN60003
UniProt:
E1TDH5
LinkDB
All DBs
Position
2:complement(608999..610747)
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AA seq
582 aa
AA seq
DB search
MTLDQRLRSMRKTMRDMFGIARLRAGQEDIIRSVLEHRDTLATMPTGAGKSLCYQLPALH
LEGTTLVVSPLIALMKDQADKLLAAGIDCTLVNSTLKSRAEREALQRIAAGDSGIVFVTP
ERLAQPAFIETLRSRPENRVGLVVVDEAHCVSHWGHDFRPAFLEIAAAVKLLGQPPVLAL
TATATPRVIDDIVRSLALREPRVVRTGTYRENLHYRVVQVSTAGGKDGAARAMAAKREQL
STLIASLAGTGIVYAATVRDVDRIYGWLAEAGESVSRYHGRMAAAAREQAQEQFMSGATR
LMVATNAFGMGIDKADIRFVIHYHIPGSLDAYYQETGRAGRDGEPADCVLLFDLNDKRIQ
QFFLAGRYPSVELAQRVYDTLTTLVDQDPKGATLKALKDALPDVGAGKLEVALNMLVDAR
VAGRDRQRRYRLRSRDDARQPARDSVAQAAAQFEQMSAHDRETLQAMIDYAQTGQCRWRA
ILDYYGDTPAVERCGACDNCVRPPQIDVTPQDIVASATSEHEVAPRRKNTPREPRVWAPG
DAVRVPRYGAGEVALASGEQVAVQFPDGSTRTFLASYVRAGR
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgacactcgaccaacggcttcgcagcatgcgcaagactatgcgcgacatgttcggtatc
gcgcgtttgcgagccggccaggaggacattattcgcagcgtattggagcaccgcgacacc
ctcgccacgatgccgaccggcgcgggcaagtcgctgtgctatcagttgcccgcgctgcat
ctggagggcacgacgcttgtcgtttcaccgttgatcgcgctgatgaaggatcaggccgac
aagctgctcgcggcgggcattgactgcacgctggtgaacagcacgctcaagagccgtgcc
gagcgcgaagcgctgcaacgcatcgccgcgggcgacagcggcattgtcttcgtgacgccg
gagcgtctcgcgcagccggcgttcatcgaaacgttgcgctcgcgcccggaaaatcgcgtc
ggcctcgtggtggtggacgaagcgcactgcgtatcgcattggggacacgatttccgaccc
gcgtttctcgagatcgcggcggcggtgaagctgctgggacagccgcccgtgctcgcgctg
actgccaccgcgacaccgcgcgtgatcgacgacatcgtgcgctcgctcgcgttgcgcgag
ccgcgcgtggttcgcaccggcacgtatcgggagaatctgcactaccgggtggtgcaggtc
agcacggcaggcggcaaggacggcgctgcacgtgcgatggctgcaaagcgcgagcagctg
tccacgctgatcgcgtcgcttgcgggcaccggcatcgtgtatgcagccaccgtgcgcgac
gtcgatcgcatctacggctggctggcggaagccggcgaatcggtctcgcgctaccacggc
cgcatggcagcggccgcgcgggaacaggcgcaggagcagttcatgtccggcgccacgcgt
ttgatggtcgcaaccaatgcgtttggtatgggcatcgacaaagcggacattcgcttcgtc
attcactaccacattccgggcagcctcgatgcgtactatcaggagactggccgcgcgggt
cgcgatggcgagcctgccgactgcgtgctgctgttcgatctgaacgacaagcgtatccag
cagttcttccttgccgggcgctatccgagcgtcgaacttgcacagcgcgtgtacgacaca
ttgacgacgctagtcgaccaagacccgaagggcgcgacgctcaaggccctcaaggacgcg
ttgccggacgtgggcgcgggcaagcttgaggtcgcgttgaacatgctggtcgatgcgcgc
gtggcgggccgagatcgtcagcgtcgttaccggctgcgcagtcgcgacgacgcacggcag
ccggcgcgcgacagcgtcgcgcaagctgcggcgcaattcgaacagatgagcgcgcatgac
cgtgaaacgctgcaggcgatgatcgactacgcgcaaaccggccagtgccgctggcgcgcg
attctcgattattacggcgatacacctgccgtcgagcgctgcggagcgtgcgataactgt
gtgcgtccgccgcaaatcgatgtgacgccgcaggatatcgttgcaagcgcaacctcagag
cacgaggtcgcgccgcgcaggaagaatacaccgcgcgaaccgcgcgtctgggcgcccggc
gatgcagtgcgcgtgccgcgctacggcgcgggcgaggtcgcgctcgcgagcggcgaacag
gtggctgtgcaattcccggacggcagcacgcgcacgtttctcgcgagctacgtgagagcg
gggcgctga
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