Brachybacterium ginsengisoli: CFK41_04520
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Entry
CFK41_04520 CDS
T05099
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bgg
Brachybacterium ginsengisoli
Pathway
bgg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bgg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFK41_04520 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bgg03021
]
CFK41_04520 (rpoC)
03400 DNA repair and recombination proteins [BR:
bgg03400
]
CFK41_04520 (rpoC)
Enzymes [BR:
bgg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFK41_04520 (rpoC)
Transcription machinery [BR:
bgg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFK41_04520 (rpoC)
DNA repair and recombination proteins [BR:
bgg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFK41_04520 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ATG54118
UniProt:
A0A291GVB0
LinkDB
All DBs
Position
1042090..1045974
Genome browser
AA seq
1294 aa
AA seq
DB search
MIDVNTFDELRIGLATADDIRGWSHGEVKKPETINYRTLKPEMDGLFCERIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTKSSVRRERMGHVELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYMVTYVDEQARHDDMPDLQARFDLEVKELENERDSAINDRALSAEKD
LAQLEEEGAKADAKRKVRDSGEREQAQIRKKYDAEIDRITRIWERFKSLKVADLEGDEQL
YRAMKLRYGTYFEGGMGAEALQRRLQDFDLEAESVLLREIIATGKGQKKARALKRLKVVS
AFLTTTNSPVGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQESVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVNGPQLNLHQCGLPKGMALELFKPFVMKRLVELSHAQNVKAAKRMVERAR
PEVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIHLHPLVCAAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPSDGRPVTMPAQDMIIGLYHLTTVREGLAGDGR
HFSSVAEAIMAFDRGELDLNAPASIRFDDIAPPSDWEAPEGWTEGDPIVLSTTLGAVYFN
ETLPVDYPFVQGQVGKKRLGGIVNALAERYDKGQVAASLDALKTYGFSWSTRSGASFALS
DVVVPPGKAEIIAKFEAKAAQVQENRDLGLVSELERNAELIDIWTEATNEVDAAMRENFE
STNAIFRMVHSGARGNWMQIRQIAGMRGLVTNPKGEIIPRPILSNYKEGLSVLEYFIASH
GSRKGLADTALKTAQSGYLTRRLVDVSQDVIVREDNCGTTKGLVLPIAVEEGGVLRAHEH
AESTVYGRVLATAAIGADGTEAAPAGTELGDVLIEQLVEAGVREAKIRSVLTCDSAVGTC
AQCYGKSLATGQLVDIGEAVGIVAAQSIGEPGTQLTMRTFHSGGVASADGDITHGLPRIQ
ELFEARTPAGFAPISDFAGRVEIEENDKQRRITVTPDDGSEPVAYTVSKRVTLLIADGDH
LEVGQQLTQGSVDPKQVLRILGPRAVQQHLVDEVQKVYISQGVDIHAKHIEVIVRQMLRR
VTVIESGDTGLLPGDFAERVNFERENRRVLSEGGQPASGRPELMGITKASLATESWLSAA
SFQETTRVLTEAALNRKSDQLMGLKENVIIGKLIPAGTGLSRFRHIAVEPTDEAKAQMYQ
VPGYDELDFSGFGQTGAVNLDDIDYADPFRTDFR
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacgtcaacaccttcgacgagctgcgcatcggcctcgccaccgccgacgacatc
cgcggctggtcccacggcgaggtcaagaagccggagaccatcaactaccgcaccctgaag
cccgagatggacggcctcttctgcgagcgcatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggcgtg
gaggtcaccaagtcctccgtgcgtcgtgagcgcatgggacacgtggagctcgccgctccc
gtgacccacatctggtacttcaagggcgtgcccagccgcctgggctacctgctggacctg
gccccgaaggatctcgagaagatcatctacttcgcggcctacatggtcacctacgtggac
gagcaggctcgccacgacgacatgcccgatctgcaggcgcgcttcgacctcgaggtcaag
gagctcgagaacgagcgcgactccgcgatcaacgatcgtgcgctctcggcggagaaggac
ctcgcccagctcgaggaggagggtgccaaggccgacgcgaagcgcaaggtccgcgactcc
ggtgagcgcgagcaggctcagatccgcaagaagtacgacgcggagatcgaccgcatcacc
cgcatctgggagcgcttcaagtccctcaaggtcgccgacctcgagggtgacgagcagctc
taccgtgcgatgaagctgcgctacggcacctacttcgagggcggcatgggcgccgaggcg
ctccagcgccggctccaggacttcgacctcgaggccgagtccgtgctgctgcgcgagatc
atcgcgaccggcaaggggcagaagaaggcccgtgcgctcaagcgcctcaaggtcgtctcc
gccttcctcaccaccaccaactcgcccgtcggcatggtgctggacgccgtcccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggcggtcgcttcgcgacctccgatctc
aacgatctgtaccgtcgcgtgatcaaccgcaacaaccgcctcaagcgtctgctggatctc
ggtgcgcccgagatcatcgtgaacaacgagaagcggatgctgcaggagtcggtcgactcg
ctgttcgacaacggccgtcgcggccgtccggtcaccggaccgggcaaccgcccgctgaag
tcgctctccgacatgctcaagggcaagcaggggcgcttccgtcagaacctgctgggcaag
cgcgtggactactccgcccgctccgtgatcgtcaacggcccgcagctgaacctgcaccag
tgcggtctgcccaagggcatggcgctggagctgttcaagcccttcgtcatgaagcgcctg
gtcgagctgagccacgctcagaacgtcaaggccgccaagcggatggtcgagcgtgcacgc
cccgaggtgtgggacgtcctcgaagaggtcatcaccgagcacccggtgctgctgaaccgt
gcgcccaccctgcaccgtctgggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccatctgcacccgctcgtctgcgccgcgttcaacgcggacttcgacggcgaccag
atggccgtgcacctgcccctgtcggcagaggcgcaggccgaggcccgcatcctgatgctg
tccagcaacaacatcctcaagccgtccgacggccgccccgtgaccatgcccgcacaggac
atgatcatcggtctgtaccacctgacgacggtgcgcgagggcctggccggcgacggccgg
cacttctcctccgtggccgaggccatcatggccttcgaccgcggcgagctggacctgaac
gccccggcgtcgatccgcttcgacgacatcgccccgccgagcgactgggaggccccggag
ggctggaccgagggcgatccgatcgtcctgtccaccaccctcggcgcggtgtacttcaac
gagacgctgcccgtcgactacccgttcgtgcagggccaggtcggcaagaagcgcctcggc
ggcatcgtcaacgctctcgccgagcgctacgacaagggccaggtcgcggcgtccctcgac
gctctgaagacctacggcttctcgtggtccacccggtcgggcgcgtccttcgcgctgtcc
gacgtggtggtcccgcccggcaaggccgagatcatcgcgaagttcgaggccaaggccgct
caggtgcaggagaaccgtgacctcggtctggtctccgagctcgagcgcaacgccgagctg
atcgacatctggaccgaggcgaccaacgaggtcgacgcggccatgcgcgagaacttcgag
tcgaccaacgcgatcttccgcatggtccactcgggcgctcgaggcaactggatgcagatc
cgccagatcgccggcatgcgcggcctggtgaccaacccgaagggcgagatcatcccgcgc
ccgatcctctccaactacaaggaggggctctcggtcctggagtacttcatcgcctcgcac
ggctcccgcaagggcctggcggacaccgcgctgaagaccgcccagtcggggtacctgacc
cgtcgtctcgtggacgtctcgcaggacgtcatcgtccgcgaggacaactgcggcaccacc
aagggcctggtcctgccgatcgcggtcgaggagggcggcgtgctgcgcgctcacgagcac
gcggagtccacggtgtacgggcgcgtcctggccaccgcggccatcggcgccgacggcacc
gaggcggcgccggccggcaccgagctcggcgacgtcctcatcgagcagctcgtcgaggcg
ggtgtgcgcgaggcgaagatccgctccgtgctgacctgcgactcggcggtgggcacctgc
gcccagtgctacggcaagtcgctcgcgaccggccagctggtcgacatcggcgaggccgtc
ggcatcgtcgcggcccagtcgatcggtgagcccggcacccagctgaccatgcgtaccttc
cactccggtggtgtggcgagcgcggacggcgacatcacccacggtctgccccgtatccag
gagctcttcgaggcgcgcaccccggccggcttcgcgccgatctcggacttcgcgggtcgc
gtggagatcgaggagaacgacaagcagcgtcggatcacggtcaccccggacgacggctcg
gagccggtggcctacaccgtctccaagcgcgtcacgctcctgatcgccgacggcgaccac
ctcgaggtcggccagcagctgacccagggctcggtcgacccgaagcaggtcctgcgcatc
ctcggcccgcgggccgtgcagcagcacctggtggacgaggtgcagaaggtctacatcagc
cagggtgtggacatccacgccaagcacatcgaggtcatcgtgcgccagatgctccgtcgc
gtgacggtcatcgagtccggtgacaccggtctgctgcccggcgacttcgccgagcgcgtg
aacttcgagcgggagaaccgtcgggtcctctccgagggcggtcagccggcctcgggtcgt
ccggagctcatgggcatcaccaaggcgtcgctcgcgaccgagtcgtggctctcggcggcc
tccttccaggagaccacccgcgtgctcaccgaggccgccctgaaccgcaagagcgatcag
ctcatggggctcaaggagaacgtcatcatcggcaagctcatcccggcgggcaccggcctg
tcgcggttccgccacatcgcggtcgagcccaccgacgaggccaaggcccagatgtaccag
gtgcccggctacgacgagctggacttctcgggcttcggccagaccggtgccgtcaacctc
gacgacatcgactacgcggacccgttccgcaccgatttccgctga
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