Brachybacterium ginsengisoli: CFK41_06970
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Entry
CFK41_06970 CDS
T05099
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bgg
Brachybacterium ginsengisoli
Pathway
bgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFK41_06970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bgg03021
]
CFK41_06970
03019 Messenger RNA biogenesis [BR:
bgg03019
]
CFK41_06970
Transcription machinery [BR:
bgg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CFK41_06970
Messenger RNA biogenesis [BR:
bgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CFK41_06970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
ResIII
NACHT
Motif
Other DBs
NCBI-ProteinID:
ATG54532
UniProt:
A0A291GWL6
LinkDB
All DBs
Position
1574447..1576591
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AA seq
714 aa
AA seq
DB search
MNDTTSGADLAAKKLPELQALAAERGIKGARRLRKGELIDAILGGGAPSSAPAAAPAATE
APAATEAPARSARTSAPAEQAPQDETGSAESGRAERSRSRSRSRATSTSGDRGETAAPDL
GFELPAGPEQQDQSGGDAASREGRDGSRESGRRRSRGGDDRRDGQDRSESQERNDGQSRN
DGRDRNEGQSRNDGQGRNDGRDRNEGRDRNEGRDRIDGQGRGGQRRRLEDIELPDRSGEQ
DEDGRDGRDNDGYDDDRRGRSRSRNRSRDRKRRGRGGQGDDQGSERGQGGGNGGQGSGQR
EDSPAREGDELMTIAGILDIRDNNAYVRTTGYLPGPSDVYVTMNQVKRAGLRKGDAITGQ
VKAPRDGEDSQPEPQQQNHGGGRNRRGKGGGGGNQSKYAALVQVDTVNGMPTDRARQRVD
FSKLTPLYPDERLRLETAPTAIAPRVIDLVSPIGKGQRGLIVAPPKAGKTIIMQQIANAI
TTNNPEVHLMVVLVDERPEEVTDMQRTVKGEVIASTFDRPASDHTIVAELAIERAKRLVE
MGRDVVVLLDSLTRLSRAYNLAAPASGRILSGGVDASALYPPKRFFGAARNIEHGGSLTI
LASALVETGSKMDEVIFEEFKGTGNMELRLSRNLADKRIFPAVDVNASGTRREEALMGKE
ELAIMWKLRRVLGSLEQQQALELLMERVKKTQSNTEFLMTVQKNTPSATGRSSD
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgacaccacctccggcgcagacctcgcggcgaagaagctccccgagctgcaggcc
ctcgcggccgagcgcggcatcaagggagcccgccgactgcgcaagggcgagctgatcgac
gcgatcctcggaggcggcgcgccgtcctccgctcccgccgcggcgcccgccgcgaccgag
gctcccgctgcgaccgaggccccggcccggtccgcgcgcacctcggcgccggccgagcag
gctccccaggacgagaccggctccgccgagtccggacgcgcagagcgcagccggtcccgg
tcgcgctcccgcgccaccagcacctccggcgaccgcggcgagaccgccgctccggatctc
ggcttcgagctgccggccgggcccgagcagcaggaccagagcggtggcgacgccgcgagc
cgcgagggtcgtgacggctctcgcgagtccggccgacgccgctcgcgcggcggcgatgat
cgtcgcgacggccaggaccgctccgagagccaggagcgcaacgacggccagagccgcaac
gatgggcgcgaccgcaacgagggccagagccgcaacgacggccagggccgcaacgacggc
cgtgaccgcaacgagggccgtgaccgcaacgagggccgtgaccgcatcgacggccagggc
cgcggcggccagcgtcgccggctcgaggacatcgagctgccggaccgctccggcgagcag
gacgaggacggccgggacggccgtgacaacgacggctacgacgacgaccgtcgcggtcgt
tcccgcagccgcaaccgctcgcgggaccgcaagcgtcgcgggcgcggcggccagggcgac
gaccaggggtccgagcgcggtcagggcggcggcaacggcggccagggctcgggccagcgt
gaggacagcccggcccgtgagggtgacgagctgatgaccatcgccggcatcctcgacatc
cgtgacaacaacgcctacgtgcgcaccaccgggtacctgcccggtccgagcgacgtgtac
gtgaccatgaatcaggtcaagcgcgccgggctgcgcaagggagacgcgatcaccggccag
gtcaaggctccccgcgacggtgaggactcccagccggagccccagcagcagaaccacggc
ggcggccgcaaccgtcgtggcaagggcggtggcggcggcaaccagagcaagtacgcggct
ctggtacaggtcgacaccgtcaacggcatgcccacggaccgtgcgcgccagcgggtggac
ttcagcaagctcaccccgctgtacccggacgagcgactccgtctggagaccgctcccacc
gccatcgcgccccgcgtgatcgacctcgtctcgccgatcggcaagggccagcgcggcctc
atcgtcgcgcccccgaaggccggcaagacgatcatcatgcagcagatcgccaacgcgatc
accacgaacaaccccgaggtccacctcatggtcgtgctcgtcgacgagcgccccgaggag
gtcaccgacatgcagcggacggtcaagggcgaggtcatcgcctcgaccttcgaccgcccc
gcctcggaccacaccatcgtcgccgagctcgccatcgagcgcgccaagcgcctggtggag
atgggccgcgacgtggtggtcctgctggactcgctcacccgtctgtcccgtgcctacaac
ctcgcggccccggcctcgggcaggatcctctccggcggtgtcgacgcctcggcgctctac
ccgcccaagcggttcttcggcgcggcgcgcaacatcgagcacggcggctcgctgacgatc
ctcgcctcggcgctggtggagaccggctccaagatggacgaggtcatcttcgaggagttc
aagggcaccggcaacatggagctgcgcctgtcgcgcaacctggccgacaagcggatcttc
ccggccgtggacgtcaacgcctcgggcacccgccgcgaggaggcgctcatgggcaaggag
gagctcgccatcatgtggaagctccgccgcgtgctcggctccctcgagcagcagcaggct
ctcgagctgctcatggagcgcgtcaagaagacccagtcgaacaccgagttcctcatgacg
gtccagaagaacaccccgagcgccacggggcgcagctccgactga
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