Brachybacterium ginsengisoli: CFK41_10070
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Entry
CFK41_10070 CDS
T05099
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bgg
Brachybacterium ginsengisoli
Brite
KEGG Orthology (KO) [BR:
bgg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bgg03016
]
CFK41_10070
Enzymes [BR:
bgg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CFK41_10070
Transfer RNA biogenesis [BR:
bgg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CFK41_10070
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
ATG55069
UniProt:
A0A291GXX1
LinkDB
All DBs
Position
2260901..2262100
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AA seq
399 aa
AA seq
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MTDTPAVTDLTAPRDGLVPVIDRIQPLLAWCERAASAPEEAVAVDAERASSYRYSSRAYL
VQLRTEAAGTALIDPLAFTLPGTLKSLLAEREWVLHAAGQDLPSLAELDLRPGTLFDTEL
AARLLGMERVGLGAVVEDTLGLHLAKEHSAADWSKRPLPEGWLTYAALDVEVLVEVRDVL
QERLQEAGKEDWALQEFEHERAREHGPTRSSSWRGLHGLGALRSVRQLAAAREMWTRRDE
IAGSQDLSPHRVIKDRDLVAAAKEAPRGREAFDRALPSKLRRKDVWWQAARTGLDLPPAH
LPERNERSYPPPHKLWSKKYPEVAERYQLVRAAAGQRAEDLEMPPENLLQPAVLREWVWE
HEQVPAESEIADQLTALGARPWQVEQAAPVIHRALTEQD
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
gtgacagatacccccgccgtcaccgatctcacggcgccgcgcgacggcctggtgccggtc
atcgatcggatccagccgctgctggcctggtgcgagcgcgcggcctcagctcccgaggag
gccgtggccgtcgatgccgagcgcgcctcgagctaccgctacagctcccgcgcctacctg
gtgcagctgcgcaccgaggccgccgggaccgccctcatcgatccgctcgccttcaccctg
cccggcacgctgaagtccctgctcgcggagcgcgagtgggtgctgcacgccgccggtcag
gacctgcccagcctcgcggagctcgacctgcgccccggcacgctgttcgacaccgagctc
gccgcccggctgctggggatggagcgggtgggtctcggcgcggtcgtcgaggacaccctc
ggcctgcacctggccaaggagcactccgccgccgactggtcgaagcgccccctgccagag
gggtggctgacctacgcggcgctggatgtcgaggtcctggtcgaggtccgcgacgtgctg
caggagcggctgcaggaggccggcaaggaggactgggcgctccaggagttcgagcacgag
cgcgcccgcgagcacggccccacgaggtcctcgagctggcgcggcctgcacggcctgggc
gcgctgcgctcggtccgccagctcgccgcggcgcgcgagatgtggacccgccgcgacgag
atcgccgggagccaggatctctccccgcaccgcgtgatcaaggatcgcgacctggtggcc
gccgcgaaggaggctccgcggggccgtgaggcgttcgaccgggccctcccgtcgaagctc
cgtcggaaggacgtgtggtggcaggccgcccgcaccggcctggatctgccgcccgcgcat
ctgcccgagcgcaacgaacgctcctatcccccgccccacaagctctggtcgaagaagtac
cccgaggtcgccgagcggtaccagctggtgcgagccgcggccggccagcgcgccgaggac
ctcgagatgccgccggagaacctgctgcagccggcagtgctgcgcgagtgggtgtgggag
cacgagcaggtcccggcggagtccgagatcgccgaccagctgaccgcgctcggcgcccgc
ccctggcaggtcgagcaggccgcgccggtcatccaccgggccctgaccgaacaggactga
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