Brachybacterium ginsengisoli: CFK41_11665
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Entry
CFK41_11665 CDS
T05099
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bgg
Brachybacterium ginsengisoli
Pathway
bgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFK41_11665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgg03019
]
CFK41_11665
Messenger RNA biogenesis [BR:
bgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFK41_11665
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF459
Motif
Other DBs
NCBI-ProteinID:
ATG55349
UniProt:
A0A291GYP8
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All DBs
Position
complement(2617728..2619422)
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AA seq
564 aa
AA seq
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MSTVFARRLPLPPPLPEGTLRIVPLGGLGDVGRNMTVLEFEGRLLIVDCGVLFPEYSQPG
VDLILPDFDLLEDRLDDVAAIVLTHGHEDHIGAVPYLLRRKPDIPLVGSQLTLAFIEAKL
KEHRIRPYTFAVAEGQQESFGPFDCEFVAVNHSIPDALAVHVSTPAGTVLHTGDFKMDQL
PLDGRITDLRAFARLGEAGVDLFMTDSTNAEVPGFTVGEQEIGPTLDTIFARAHQKIVVA
SFSSHVHRVQQVLDAAAAHGRKVAFVGRSMVRNMGIAEQMGYLHVPDDTLIDVRRIDGLP
DDQVVLMCTGSQGEPMAALGRIANRDHRVSVGPGDVVILASSLIPGNENAVFRVVNGLMA
LGAEVVHKGNAKVHTSGHASEGELLYCYNIVRPRNVMPIHGEVRHLIANGRIAERTGVPR
ERIVLAKDGHVVDLKDGIATTVGELPNGYVYVDGSSVGEISEADLKDRRILGDEGFISLF
AVVNSETGALIAGPEIHARGVAEDAQVFEKIRPEIIKALEKAVADQTDRHDTHQLQQVMR
RVVGRYVGQRLRRRPMIIPIVIES
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgtcttcgcccggcgtctcccgctcccgccgccgctgcccgaggggacgctg
cgcatcgtcccgctcggcgggctcggcgacgtgggccgcaacatgaccgtgctggagttc
gagggtcggctgctgatcgtcgactgcggcgtcctcttcccggagtactcccagcccgga
gtcgatctgatcctgcccgacttcgacctcctcgaggaccggctcgacgacgtcgccgcg
atcgtgctcacgcacggccacgaggaccacatcggggccgtcccgtacctgctgcgtcgg
aagccggacatcccactggtgggcagccagctcacgctcgcgttcatcgaggcgaagctc
aaggagcaccgcatccggccgtacaccttcgcggtggcggaggggcagcaggagagcttc
ggcccgttcgactgcgagttcgtggcggtcaaccactccatccccgacgctctcgccgtg
cacgtgtccacgccggccgggacggtgctgcacaccggcgacttcaagatggaccagctg
ccgctggacggtcggatcaccgacctgcgcgccttcgcccgtctcggcgaggccggggtc
gacctgttcatgaccgattcgaccaacgccgaggtccccggcttcaccgtcggcgagcag
gagatcggcccgaccctggacacgatcttcgcgcgagctcaccagaagatcgtcgtggcc
tccttctccagccatgtccaccgcgtccagcaggtgctggacgccgcggcggcgcacggt
cggaaggtcgccttcgtgggccggtccatggtgcggaacatgggcatcgcggagcagatg
ggctatctgcacgtcccggacgacaccctcatcgacgtcaggcgcatcgacggcctgccc
gatgaccaggtggtgctcatgtgcaccggcagccagggcgagccgatggcggcgctgggc
cggatcgcgaaccgtgaccaccgcgtgagcgtggggccgggagacgtcgtcatcctcgcc
tcctccctcatcccggggaacgagaacgccgtgttccgtgtggtcaacggcctgatggcg
ctgggtgccgaggtggtccacaagggcaacgcgaaggtgcacacctcggggcacgccagc
gagggcgagctgctgtactgctacaacatcgtgcgtccccggaacgtcatgccgatccat
ggcgaggtgcgccacctcatcgccaacggccggatcgccgagaggaccggggtgccgcgg
gagcggatcgtgctggcgaaggacggccacgtcgtggatctgaaggacgggatcgcgacg
acggtcggggagctgcccaacggatacgtctacgtcgacggctccagcgtcggcgagatc
tccgaggcggacctcaaggatcggcggatcctgggcgacgagggcttcatctccctgttc
gccgtggtcaactccgagaccggtgcgctgatcgccggcccggagatccatgcccgcggc
gtcgccgaggacgcccaggtgttcgagaagatccgcccggagatcatcaaggccctcgag
aaggcggtcgccgaccagaccgaccgccacgacacccaccagctgcagcaggtgatgcgc
cgcgtggtgggccggtacgtcggccagcgcctgcgccgccgcccgatgatcatcccgatc
gtcatcgagtcctga
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