Blastomyces gilchristii: BDBG_01039
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Entry
BDBG_01039 CDS
T06540
Name
(RefSeq) mRNA cleavage factor complex II protein Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
bgh
Blastomyces gilchristii
Pathway
bgh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bgh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
BDBG_01039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgh03019
]
BDBG_01039
Enzymes [BR:
bgh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
BDBG_01039
Messenger RNA biogenesis [BR:
bgh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
BDBG_01039
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Clp1
CLP1_P
N6_Mtase
Atrophin-1
Motif
Other DBs
NCBI-GeneID:
8507194
NCBI-ProteinID:
XP_031576209
UniProt:
A0A179U931
LinkDB
All DBs
Position
Unknown
AA seq
406 aa
AA seq
DB search
MLSVPGSLTATAFRSMVDVEEGWGSSPMSGPSPIPVKLPLVYFYGLPSPLDAEGQVYKPI
VSRLALAVAGRLAEDRDAGEAGIVIDTPGVLSQGGKGEDVIHHIVTEFSITTILVLGSER
LYSSMVKHYDNKPISTSTSTTSAAAGTATPSTLDRISVVKVTKSGGSVDRDASFMKCVRD
SQIRSYFFGNPIPSTASSALSLSATSSGTTITLSPHAQQLDFDALSIYTITATLEDDDDY
DPSTFGMNDSFLPGGINDRDDDENLQTQQQQQQQQQQHQYQEITDHTTTTSPFLSSPTTA
TTTTTSTTATSPFTHPSSIPLKKLPPSTTSPVPLALENTLLAVTHAAPNAPLHEIRDASV
MGFVYVAGVDEKKAKIRVLAPVGGRVPSRAMIWGKRWPGELVGLVG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgctgagtgtccccggtagcttgacggcgacggcgtttcgatctatggtggatgtggag
gaagggtgggggagtagccccatgtctggccccagtcctataccggtgaaactgccgctg
gtgtatttttatgggttgccgagtccgttggatgcggaggggcaggtgtataagcccatt
gtgtcgaggttggcgttggcggttgccgggcggttggcggaggatagggatgcgggggag
gcggggattgttattgatacgcctggggttcttagccagggggggaagggggaggatgtt
attcaccatatcgttactgagttttcgatcacaacaatcctcgtactaggctctgaacgc
ctctacagctccatggtaaaacattacgacaacaaacccatctcaacatccacatccacc
acctccgccgctgcgggaacagccaccccgtccaccctcgatcgtatatccgtcgtcaaa
gtgacaaaatccggcggcagcgttgaccgcgatgcctccttcatgaagtgcgtccgcgac
tcgcaaatccgctcttacttcttcggcaaccccatcccttccaccgcctcttccgccctc
tccctctctgcgacctcctcaggaacaacaatcaccctctccccgcacgcgcaacagctc
gacttcgacgctctctccatatacaccatcaccgccacgctcgaggacgatgacgactac
gacccttccaccttcggtatgaatgactccttcctacccggcggcatcaacgaccgcgac
gacgatgagaatctacaaacacagcaacagcaacagcagcaacaacaacaacaccagtac
caggaaatcacagaccacacaacaaccacctcccccttcctctcctcccccaccaccgcc
accaccaccaccacatcaacgacagcgacatcaccattcactcacccgtcctccatccct
ctaaaaaagctgcccccctccacaacctcccccgtcccactagcgctagaaaacaccttg
ctagcagtaacacacgcagcccccaacgccccgctccatgagatccgcgacgcgagcgtc
atgggctttgtttatgtggccggcgtagatgagaagaaggcgaagattagagtgctggcg
cccgttggggggagggtgcctagtcgagctatgatatgggggaagaggtggccgggggag
ttggtggggttggttgggtga
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