Blastomyces gilchristii: BDBG_01653
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Entry
BDBG_01653 CDS
T06540
Name
(RefSeq) nonsense-mediated mRNA decay protein Upf3
KO
K14328
regulator of nonsense transcripts 3
Organism
bgh
Blastomyces gilchristii
Pathway
bgh03013
Nucleocytoplasmic transport
bgh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bgh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
BDBG_01653
03015 mRNA surveillance pathway
BDBG_01653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgh03019
]
BDBG_01653
Messenger RNA biogenesis [BR:
bgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
BDBG_01653
mRNA cycle factors
P-body specific factors
BDBG_01653
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
8510554
NCBI-ProteinID:
XP_002628745
UniProt:
A0A179UBX4
LinkDB
All DBs
Position
Unknown
AA seq
571 aa
AA seq
DB search
MVRHSPKPSSAGVLPIPATATQKGTSNKPSSRAAAPRLKLLIRRLPPGLTPQEFEAVLGD
EWKVGNGKVDWFHYKEGKVSKDPAKPSRPTRVYLRVTSIPLVEELSEKVRASAFQDARNT
SRDPVVLGPPAVEYAPYPRVPSSRVRRDGRQGTIDLDSDFIAFLESLTNPVTKPAMDIGA
EDTKEEKPTITPLIQFLKDKKANKGKEASSLTKPSRHGRGDAREGKDPKVERVHARKLLS
RADKAAPSPGDRQWKLDRATKEAVKAVNKQTANQISKAPGKTIASRLPKEEPPAQTAPPA
ERRRVRGSMSAATKILRRDLGLAPTTPRRRPEKPAYGEGASSPPTSETAKGLAFSNGESG
KRTSLKASRETELVRKPAITKSPKASSPSNTATGRNANNSTNAPASPGKLTTPPGPKHSS
PTQASGKACPQPTATQAFLKHANPSQGVTEELLASGFSTFGKVVKVEIDKKKGFGYVDFA
EPDGLAKAIQASPVQIAQSQVVVLERKSGAAVAQARGNASNRPNQPPGGGGPAPSRPTRR
GNRGKGGFKKGGGGGNAGGSAAGGNKNASST
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgccattcccccaagccatcgtctgctggtgttttgcccatccctgcgacggcc
actcaaaaaggaacatcaaacaaaccgagctccagagctgctgctccacggttgaagcta
cttattcgaaggcttccgcctggtctgacgcctcaggaatttgaggcagttctgggcgat
gagtggaaggttgggaatggaaaagttgactggtttcactacaaggaaggaaaagtttct
aaagacccggcaaagccttctcgacctacgagggtatatctacgtgttacatctataccg
ctagttgaagaattatccgaaaaagtccgagcatctgcatttcaagatgcgcgcaacacc
agtcgagatcctgttgtcctggggccgcctgcggtagaatatgcgccttatccccgtgtt
cctagtagcagagttcgcagggatggccgtcagggaacaatagacctggattccgacttc
atcgcattccttgagagcttaacaaaccctgtaaccaagcctgctatggatatcggggcg
gaggatacaaaggaagagaaaccaacgataacccccttaatccaattcttaaaggataaa
aaagcgaataagggcaaggaggccagttctctcacaaagccctcgagacacggtcgtggt
gatgcgagggaggggaaagaccctaaagtggaacgggtccatgccaggaagttgttaagc
cgagcggacaaggcagcgccctcaccgggagacagacagtggaaacttgacagggccacg
aaggaagccgttaaagcagttaacaaacagacagcgaaccaaatatcaaaggctcccgga
aagacaattgcatcgcggttgccaaaagaggaaccgccggcccagactgcaccgcctgcg
gagcgcagacgagtgcggggaagtatgagtgccgcaactaaaattctacgacgggacttg
ggacttgctccaactactccacgcagaaggccagagaaaccagcgtacggagagggtgca
tcatcaccaccgacgagcgagactgccaaaggactcgcgttttccaacggtgaaagtggt
aaacggacttcactgaaagctagcagggaaactgaattagttaggaagcccgcaattaca
aaatctcccaaggcttcctcaccgtccaacacggcaacaggccgtaatgcaaacaactcg
acgaacgcgccagcaagcccgggaaagctcacaaccccgcctggaccgaagcactcctct
cctacacaagcttctggcaaagcatgtccccagcccaccgctacacaagcctttttgaag
catgctaatccatcccaaggggttactgaggagttgctcgcgagcggtttttctaccttt
ggaaaagttgtgaaagtggagatagacaaaaagaaagggtttgggtacgtggactttgcg
gagccagacgggttggctaaggctatccaagccagcccagtccagatagcgcaaagccaa
gttgtagtgctggagaggaaatcgggcgcagcggttgcacaggcacggggaaatgctagc
aatcggccgaaccaacctccagggggtggagggccagcaccctcacgaccgactcgccga
gggaatagaggcaagggtggatttaagaaaggtggaggcggaggcaatgctggcggtagt
gctgctgggggaaacaaaaatgcctcgtcaacctga
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