Blastomyces gilchristii: BDBG_02637
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Entry
BDBG_02637 CDS
T06540
Name
(RefSeq) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bgh
Blastomyces gilchristii
Pathway
bgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BDBG_02637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgh03019
]
BDBG_02637
03041 Spliceosome [BR:
bgh03041
]
BDBG_02637
03009 Ribosome biogenesis [BR:
bgh03009
]
BDBG_02637
03016 Transfer RNA biogenesis [BR:
bgh03016
]
BDBG_02637
Enzymes [BR:
bgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BDBG_02637
Messenger RNA biogenesis [BR:
bgh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
BDBG_02637
Spliceosome [BR:
bgh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
BDBG_02637
Complex C
U4/U6.U5 tri-SnRNP related factors
BDBG_02637
Ribosome biogenesis [BR:
bgh03009
]
Eukaryotic type
Pre-60S particles
Helicases
BDBG_02637
Transfer RNA biogenesis [BR:
bgh03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
BDBG_02637
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
ECT2_PH
Motif
Other DBs
NCBI-GeneID:
8506908
NCBI-ProteinID:
XP_002627966
UniProt:
A0A179UF35
LinkDB
All DBs
Position
Unknown
AA seq
1081 aa
AA seq
DB search
MDDLFDVFEDKPSSGIPLQDPSKPRKKKDKNRKRQANGVVKDIPNAVSGQENGEITDTPM
EDVDAAEPSEPQNGQPDPKRQRLQPEPEPVVADTFETEQSREIAGSAGLQGTQDTKAVVL
SHQVRHQVALPPDYPYVPISEHKPPETPARTWSFTLDPFQQVSIASIERGESVLVSAHTS
AGKTVVAEYAIAQSLKNNQRVIYTSPIKALSNQKYREFAAEFGDVGLMTGDVTINPTATC
LVMTTEILRSMLYRGSEIMREVAWVIFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSA
TIPNAMQFAEWITKMHNQPCHVVYTDFRPTPLQHYFFPAGADGIHLVVDEKGVFREENFH
KAMETIAEKQGDDPANAMAKRKGKGKDKKTNKGGDGNKGPSDIYKIVKMIMLKNYNPVIV
FSFSKRECEAFALQMSKMAFNDESEKEMVSKVFNSAIEMLSDEDKELPQIKHILPLLRLG
IGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRW
ITPSEFVQMSGRAGRRGLDDRGIVIMMINEEMDPTVAKEIVRGEQDKLNSAFYLGYNMVL
NLLRVEGISPEFMLERCFYQFQNAASVSGLERELAELEKEYAGMVIADEGTIREYYDLRQ
NIATYTSDMRTVISLPNYCARYMQPGRLVQIQYKDHDFGWGAVVNSQKRKPPRNAPNEEY
PPHESFILDVLLQVAEDSSSPTKAGQNPLPPGIGPSRPGGKFKVEVVPVLIGCLKSISHI
RIRLPQDLKPISARNEANKHIVEIQRRFPDGVPLLDPIEDMGIRDDSFKKLLRKIEVLES
RLISNPLHNSPRLPELYDQYAAKTELGSKIKATKKKITEAMSIIQLDELKCRKRVLRRFQ
FINEAEVVQLKARVACEISSGDELMLSELLFNGFFNNLTPEQCAAVLSVFVFEESSKETP
PISKEELAKPLRDIQAQARIIAKVSQESKLAVNEDEYVKGFRWELMEVIYEWAKGKSFAE
ICKMTDVYEGSLIRTFRRLEECMRQMAQAAKVMGSEDLEKKFEKSLEMVKRDIVAAQSLY
L
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atggatgacttgttcgacgtattcgaggataaaccttcctctggaattcctcttcaagac
ccttcgaaaccccgaaagaagaaagacaaaaatagaaaaagacaggcaaatggagtcgta
aaggatatcccgaatgcggtgagcggccaagagaatggagagattacagataccccgatg
gaagatgtggacgcagcggagccctccgagccgcaaaatggccaacccgatccaaagcga
cagcgcctccaaccagaaccagagcctgttgtagccgatacattcgaaactgaacagtcg
cgagagattgcaggctctgccggtctccaaggaacgcaggataccaaggctgttgttcta
tcgcatcaagttcggcatcaggttgcgctacccccagattacccctatgtcccaatttcc
gaacacaaaccaccagaaacgcccgcaaggacatggagcttcactctagatcccttccaa
caggtctcaatcgcgtcgatcgagaggggtgagagtgttttagtctccgcccatactagc
gctggaaagacggtggttgcagaatatgctattgcgcaaagtctgaaaaataatcagagg
gttatctatacaagccccataaaggcgctgagcaaccagaaataccgggaatttgctgct
gagtttggagatgttggattgatgactggcgatgttaccataaatcctacggccacatgt
cttgtcatgacgactgagattttgcgatctatgttatacagaggttcagaaatcatgcgc
gaggtggcttgggtgattttcgatgagatacattatatgcgagacaagactcgtggtgtc
gtatgggaagaaaccattattcttcttccagacaaagttagatatgttttcctctccgca
acaattccgaacgcgatgcaatttgcagaatggattaccaagatgcacaaccagccgtgc
cacgtcgtctacactgatttccgaccaacccccctacaacattactttttccctgctggc
gctgatggaatacaccttgtcgttgatgaaaaaggagtgttccgtgaggagaatttccat
aaggcgatggagacgatcgccgagaaacaaggagatgatccagcaaacgcaatggctaag
cgaaagggtaaaggaaaagacaaaaagacaaataaaggcggagacggtaataaaggtcca
tctgacatctacaagatcgtgaagatgattatgcttaaaaattacaacccggtcattgtt
ttcagtttcagtaaaagagaatgcgaggcttttgcattacagatgagcaagatggcattt
aacgatgaatcagagaaagaaatggtcagcaaggtgttcaatagtgcgatcgagatgctc
tccgatgaggacaaggagctaccacaaattaaacacatcctaccgctacttcgtctcggg
atcggggtccaccactccggccttctccctatcctcaaggagaccatcgaaattctgttc
caggaaggactgattaaggtactattcgctacagaaacgttttccatcggtctaaacatg
cctgccaagaccgtggttttcacaagtgttcggaaattcgacggtgtaagccaacgctgg
attacgccctctgagtttgtacaaatgtcgggtcgtgctggacgtaggggtcttgacgac
cgcggcattgtcatcatgatgatcaatgaagaaatggatccaacggttgcgaaggaaatt
gtccgtggagagcaagacaaacttaattcggccttttatctaggctacaacatggtattg
aaccttctacgagtggaggggatctcacctgagtttatgttggagcgatgcttttatcaa
ttccaaaatgcggctagtgtatctggtttggaaagggaactggccgaattggagaaggaa
tatgccgggatggtaattgccgacgaagggacgatccgggaatactatgatctacgccaa
aacatcgccacatacacctcggatatgcgtactgtgatcagccttccaaactactgtgca
cgttacatgcaacccgggcggcttgttcaaatacaatataaggaccacgactttggttgg
ggtgctgttgtcaactctcaaaaacgaaaacctcctcgaaacgctccgaatgaagaatat
cctccccatgaaagctttattctcgatgtcttgctacaagtcgcagaggactcatcttcc
ccaacgaaagctggtcaaaatcctctgccccctgggatcggaccttctcggccgggaggg
aagttcaaggtggaagttgttcccgtgctaattggttgcttaaagtcaatctcccacatt
cggattcggttacctcaggaccttaaaccaatcagcgcgaggaacgaggctaacaaacac
attgtggagatacaaaggcgattccctgatggagttccccttctggatcctattgaggac
atgggcataagggatgactccttcaagaaactccttcggaaaattgaagtattagagtca
cgtctaatatccaatccactccataactccccccggcttccagaattatatgaccagtac
gcggcaaaaactgaactgggctcaaaaataaaagcaacaaaaaagaagatcacggaggcc
atgtcgattatccaattagacgagctaaaatgtcgcaaacgggtacttcgccgcttccag
ttcatcaacgaggcagaggttgtgcaactaaaagcccgtgtcgcatgcgagatcagcagc
ggcgacgagcttatgcttagtgagcttctctttaatgggttttttaataacctcaccccc
gagcagtgtgccgcagtccttagcgtgtttgtcttcgaggagagttccaaagagacacca
cctatatccaaggaagagctggcgaagccactgagggatatccaagcccaggcgaggatc
attgccaaagtgtcgcaggagtccaagctcgcagtcaacgaagatgaatatgtgaaagga
ttccgatgggagttgatggaggtcatatatgaatgggcgaaggggaagtcatttgcggaa
atttgcaaaatgacggatgtttatgagggaagcttgatccgcacattccgacgactagag
gagtgcatgcgacagatggcccaggcagcgaaggtgatgggcagcgaagacttagagaag
aagttcgagaagtcccttgagatggtgaagcgggatatcgttgcggcccaatcgctatac
ctctag
DBGET
integrated database retrieval system
