Blastomyces gilchristii: BDBG_04232
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Entry
BDBG_04232 CDS
T06540
Name
(RefSeq) mRNA cleavage and polyadenylation specificity factor complex subunit
KO
K06100
symplekin
Organism
bgh
Blastomyces gilchristii
Pathway
bgh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bgh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
BDBG_04232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bgh03021
]
BDBG_04232
03019 Messenger RNA biogenesis [BR:
bgh03019
]
BDBG_04232
Transcription machinery [BR:
bgh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
BDBG_04232
Messenger RNA biogenesis [BR:
bgh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
BDBG_04232
U7-dependent histone pre-mRNA processing factors
BDBG_04232
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
8505062
NCBI-ProteinID:
XP_031578197
UniProt:
A0A179UJL2
LinkDB
All DBs
Position
Unknown
AA seq
827 aa
AA seq
DB search
MALPFDNLAEQMSQLDTARNVVLGDAALYPQIVQGILPIIGAKARLELRRWGADFLAETF
ASPALAQQPKQKLSTLVIQTLWELLENPDEDASVVRGVIQTAASIYPLVFRTILDNPDES
ALWEKMTGIKQNILKRWDTASNNIKVCCIKFVQKVVQVQTTGVISDPRRPEQNETSLSIV
PRNHPLIPLPNLEAEASGLLDRLLNVFYENSSDPILVNATLNCLPILIRTRQSISSKIVN
AILNFNPLKQANAPMTPSIRVNIKSMERTTRALLINLMKRNPNHPLASRVQQYLERLAQS
RNDIFEDASKKRALPSEPTDLVDSAKRARLGVDTPPQLKIPPMPPGPNSFAQLFTLTDDV
GLTSFDVKQLPADLIVKITVPVLSRVDPEALDQAIGAVRSRYLTLSKKQIFERQASQSAA
PSAAAGVEEEDEYEPEYQPMDIPAATQAPAGPSAAENEEFQPDLVALGPFVLPQPPPLSG
SEAAAIGKGAIERVFSMISTLEQPSKALKGSQKPGFGRLAASSFDRDSWLVLLTRMATRA
SAGLEVDETDELIKTEGGRPSLSNQRISMADGIREMLYRYVLEDFRVRINVAISWMNEEW
YNDQIRLKYATSERKSEHNVNVPKHYDKWVMRLLEGILPYLDARDKVLIRFLSEIPELSP
KLVQKTKTLANDPERVTLCVQALHYLVLVRPPARSLCLDALQDLYTKVEEARPLITKILF
KWRPHALPKQDSTSKPNPTSTQSPPTATSSTEQGQSAHLNPTAVAGDNTSNGVKSEPGAG
TVDVQNQHVKAEPESMPNSIQGSTQQQEMKASDDMGASSSTATPAPS
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggctctgcctttcgacaatctcgcggagcagatgtcccagctggacactgctaggaat
gttgtacttggcgatgcggctttatatcctcagatcgttcagggcatacttccaataata
ggcgcaaaagcacgtttagaacttcggagatggggcgccgatttcctagcagagacgttt
gccagccccgcgctggcccaacaaccgaagcagaagctgagtacactggtgatccagaca
ttgtgggagctgttggagaacccagatgaggatgccagtgtcgtaaggggtgtgattcaa
actgctgcgagtatttacccattggtgtttagaactatccttgataaccccgacgaatct
gcattgtgggagaaaatgacaggcattaagcaaaatattttaaagcgatgggacactgct
tcaaataacatcaaggtttgctgtatcaaattcgtccagaaggtggtgcaggtccaaact
actggcgtgatttcagatccaaggcgtcctgaacaaaatgaaacatccctatcaattgtg
ccgagaaatcatccgcttataccactacctaatcttgaagcggaagcttctggtttgcta
gataggctactcaacgttttctatgaaaattcgagtgatcctatcttggtcaacgcgacg
ctaaattgcctccctattctgatacgcactcgacagtccatttcaagtaagattgtaaat
gcgattctaaacttcaacccccttaaacaagcgaacgcgccaatgactccttcaattcga
gtaaatatcaagtccatggaacggaccacgagagcattgctcatcaatttaatgaagagg
aacccaaatcatcctctcgcgagccgtgtacagcaatatttggaacgattggcacagtcg
cggaatgacatattcgaggacgcatcgaagaagcgagcgctaccgagcgagcccactgat
cttgtagacagcgcaaagcgtgcaagacttggtgtggacactccacctcaattaaagatc
cctcccatgccccctggcccaaattcttttgctcagctcttcacattgaccgatgatgtt
ggtttgacatccttcgatgtcaagcagctccccgcggatttaattgtcaaaatcaccgtt
ccagttcttagtcgagttgaccctgaggcgttagatcaagctattggtgccgttcgatcc
cgttacctcacattatccaagaaacaaatcttcgaacgtcaggcctcgcagtctgccgct
ccgtcagcagcagcaggagtagaagaggaagatgagtatgaaccagaatatcagccaatg
gacattccggctgcgacacaagcgccagcgggaccttccgctgctgaaaacgaagaattc
caaccagatcttgtcgcccttggtccttttgtactcccccagccaccgccattatcaggg
tcagaggccgctgcaattggtaaaggagcaattgaaagggtttttagcatgatttccacc
ttagagcaaccgtcaaaggcactcaaaggctctcagaagccaggtttcgggagactggct
gccagctcatttgatcgggactcttggctagtcctactcactcgaatggcaactcgagct
tcggctggcctggaggtagatgagacggatgaacttattaaaactgaaggcggccgccca
tcgttgtcgaaccaacgtatcagcatggcagacggcatcagggaaatgttatatcgatat
gtccttgaagattttcgtgttagaatcaacgtcgcaatttcttggatgaacgaagagtgg
tacaatgaccaaatacgactgaaatatgcaacctcagagagaaagagtgaacataatgtt
aacgttccgaaacactatgacaaatgggttatgaggctactagaaggcatcttgccttat
ttggacgcgagagataaggtcctgattaggtttctaagtgagataccagaactcagccca
aagcttgtgcaaaagacgaagacgttagcaaatgaccctgaacgtgtcacactatgcgtt
caggcccttcactaccttgtcctcgtgcggcctcctgcaaggagtctttgcttagatgct
ctccaagacctctatacaaaagtggaagaagcacgccccctcattacaaaaatccttttc
aaatggcgaccccatgcccttccaaagcaagactctacttcaaagcccaaccccacgtcg
acgcaatctccacccaccgccacatcgtctactgaacaaggccaaagcgcccacctcaat
cccaccgccgtggctggggataacacgtcaaatggtgtaaagtcagagccaggagctggc
accgtcgatgttcaaaaccagcatgtcaaagctgagcctgaatcgatgccaaactcaatc
cagggcagcacacagcaacaggagatgaaagcctcggacgatatgggggcttcgtcatcc
actgccacccccgcaccgagttga
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