Blastomyces gilchristii: BDBG_06050
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Entry
BDBG_06050 CDS
T06540
Name
(RefSeq) mRNA cleavage factor complex component Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bgh
Blastomyces gilchristii
Pathway
bgh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bgh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
BDBG_06050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bgh03021
]
BDBG_06050
03019 Messenger RNA biogenesis [BR:
bgh03019
]
BDBG_06050
Transcription machinery [BR:
bgh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
BDBG_06050
Messenger RNA biogenesis [BR:
bgh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
BDBG_06050
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pfc11_Clp1_ID
CID
Pcf11_C
zf_PCFS4
VHS
Zn_ribbon_ISL3
UBZ_FAAP20
Motif
Other DBs
NCBI-GeneID:
8503014
NCBI-ProteinID:
XP_002622870
UniProt:
A0A179USL1
LinkDB
All DBs
Position
Unknown
AA seq
653 aa
AA seq
DB search
MSTGLASDEVAEDYKNSLEDLTGNDKFQISNLTVIAKENTEHAMAISRVLENHIRTTPPA
QKLPALYVVDSVVKNVGTPYTLFLGRNLYQTFMNAYTLVDSQTRKKLDEMLKTWKEPVPG
SLDTRPVFPVEITRSIENALIKARTAALQNQQARSQHDILGRNRGVTTPPTSTTWRNTPT
PPQIPPRLTQSANQNIPQQYPSNGHQHYPSAQPVQPYGQPFQESIDLSALHRDIESLIAT
ARADFAINPLDPSIQQRLKALLDLQNILQQQKLPQDQLKLIRDQVSQLSPQSPQAQPPPR
VVPTPPIPQAAQSIQNHTPQPNLQALLNPATIAELIKATTNQQSRTPPPPPVVPHIPPFL
QPQATSTPPPPAPSTAPTLTENPLIASLRARGLLPPPTSSAPPTPPNLPFILPGQAGYTP
PAVISQLSNPSEVKINIQMTSASIRIPRPNLISTLYEEKPNRCGTCGRRFHSDDQGKEKK
ARHLDWHFKTNQRMTEASKRGQSRSWYLGEREWIKSREYDDDTGGQTGEGATSTNGSATD
AAAAGAKKSSQKPWIHAPNDAALRNAPCPICQEKFESTWSEEAQDWIWHDASKVGSRVYH
ASCYSEVTRDGTATGQGTPVGRTGTPDSVLGKRKAEEPESVTTSVRIKTEPAS
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgtctacaggacttgcgtctgatgaagttgcggaagattacaagaactcgctcgaggac
ctgacaggaaacgataagttccaaattagcaatctcacagtgattgcaaaggaaaatact
gaacatgcgatggccatctcccgagtactggagaatcatattcggacaactccgccagct
cagaaacttccagctctttatgtagttgattctgttgtcaaaaatgtaggaacgccctac
actctatttttggggcgcaacctctatcagaccttcatgaacgcatatacgctcgtcgat
tctcaaacccgcaagaaactggatgagatgttgaaaacttggaaagagcctgttcctggt
tccctggatactagacctgttttccccgttgaaataacccgcagtattgagaatgctctt
atcaaagccagaacagccgcgcttcagaatcagcaggcaagaagccagcacgatatcctt
gggcggaatcgcggagttactactcctccaacttctactacctggcggaacactccaacc
ccgccgcaaattcccccacgacttacccaatccgccaaccaaaatatcccccaacagtac
ccgagtaatgggcaccagcactacccgtcggctcaaccggttcagccatacgggcaacca
tttcaagagtcaattgaccttagcgcattacaccgtgatatagagagtttgatcgcgacc
gctcgagctgactttgcaattaatccacttgacccttcaattcagcaacggctaaaagct
cttttagacctccagaacatcctgcagcagcaaaagctaccgcaagaccagctaaagctt
attcgagatcaggtatctcagctttccccgcagtcaccccaagctcagcctccccctcgg
gttgttccaactccacctataccccaggcagctcaatcaatacaaaaccacaccccgcag
ccgaatcttcaagcccttctaaaccctgccacgattgcggagcttataaaagcgacaaca
aaccagcaaagccgaacaccaccaccaccgccggtggtgcctcatattccaccattccta
cagcctcaagccaccagcactccgcccccccccgcaccgtctacagcacctacccttaca
gagaatcccttgattgcctcccttagagctcgaggcctactcccgcccccaacttcatct
gctccgccaacaccccctaatctacctttcattctccctgggcaagcgggatatacacca
cccgctgttatttcacaattatctaacccatctgaagtcaaaattaacatacaaatgacc
tcagcgtccatcaggatcccgaggccgaacctaatttctacgctgtacgaagaaaagccg
aatcgatgcggaacatgtggccgccgctttcattcagatgatcaaggaaaagagaaaaag
gcacgacacttggattggcatttcaaaactaatcagcgcatgactgaggcatccaagcga
ggacagagtcgtagctggtatctgggtgagcgggaatggataaaatcccgagagtacgac
gacgataccggtggccaaacaggtgaaggtgcaacttccaccaacggatcagcgacagat
gctgctgcggctggagcaaagaaatcatcgcagaagccatggatccacgcacccaacgac
gcggcgctacgcaatgcaccatgcccaatctgccaggagaagttcgaatcgacgtggtct
gaagaagcgcaagactggatctggcatgatgccagtaaggtggggagtcgtgtatatcat
gcaagctgttactcggaggttacgagggatggcacggcgacgggacaggggacgccggtt
ggtagaaccgggactccagactctgtcttggggaagaggaaagctgaggaaccagaaagt
gtcacaactagcgttagaataaaaactgagcctgcatcatga
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