Blastomyces gilchristii: BDBG_06394
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Entry
BDBG_06394 CDS
T06540
Name
(RefSeq) small nuclear ribonucleoprotein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
bgh
Blastomyces gilchristii
Pathway
bgh03018
RNA degradation
bgh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bgh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BDBG_06394
09123 Folding, sorting and degradation
03018 RNA degradation
BDBG_06394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgh03019
]
BDBG_06394
03041 Spliceosome [BR:
bgh03041
]
BDBG_06394
Messenger RNA biogenesis [BR:
bgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
BDBG_06394
mRNA degradation factors
5'-3' decay
Lsm complex
BDBG_06394
Spliceosome [BR:
bgh03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
BDBG_06394
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
8503480
NCBI-ProteinID:
XP_002623546
UniProt:
A0A179UU58
LinkDB
All DBs
Position
Unknown
AA seq
160 aa
AA seq
DB search
MSERSSFRGGPRGGGGGRGGGIGGYGYRSHRGGGGGASYQQQQQQSGGVQGGQGWQQGQQ
QQQQQEKPKKENILDLTKYMEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVKETMRDDE
GNQTTRSLGLIVARGTLLVLISPVDGSEEIANPFLQAEDE
NT seq
483 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaacgcagctctttccggggtggtccccggggtggtggtggtggacgcggcgga
ggtataggcggttacggctaccgtagccatcgaggtggcggtggcggtgcatcatatcaa
cagcagcagcagcagtctggcggagttcagggcgggcaaggctggcagcagggtcagcag
cagcagcagcagcaggagaagccgaagaaggagaatattttggatctaacgaagtatatg
gagaaggaggtttgtgtcaagtttaatgggggtagggaagtaaccggcactctcaagggc
tatgatcaactcatgaacctcgtcctcgatgatgtaaaagaaactatgcgcgacgacgag
ggtaaccaaacaacccgctccctcggcctcatcgtcgcccgcggcacattgcttgtgctc
atctcgcccgttgatggcagcgaggagattgccaatccgttcttgcaggcggaagatgag
tga
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