Blastomyces gilchristii: BDBG_07004 Help Entry BDBG_07004        CDS       T06540                                  Name (RefSeq) DEAD/DEAH box RNA helicase   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism bgh  Blastomyces gilchristii Pathway bgh03018   RNA degradation Brite KEGG Orthology (KO) [BR:bgh00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     BDBG_07004  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:bgh03019]     BDBG_07004 Enzymes [BR:bgh01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      BDBG_07004 Messenger RNA biogenesis [BR:bgh03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      BDBG_07004   mRNA degradation factors    3'-5' decay     Ski complex      BDBG_07004 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4-like_stalk MTR4_beta-barrel ResIII DEXQc_Suv3 Helicase_C NDUFB10 Motif Other DBs NCBI-GeneID:  8502746 NCBI-ProteinID:  XP_031579906 UniProt:  A0A179UWP4 LinkDB All DBs Position Unknown AA seq 1317 aa AA seqDB search MAEDRGLLDAVQQVHTAANNLAGDDTLDVWITRAGNEELANGEREAGTRFQSRSRRCEVQ SDEELKAELEREFLNPSPRFSTPWLNKLQQRWEVPVDYTNLFELAPPQTRTIIRFTREGL EGRVTGYREVTVPASSATAKNSTSLLRRPAGRADFVRGAAGFFPFAPGGLEGVEAIAELE SDAQNDGRQTSAGGKGSRLDRIINFGVEGGLLEVPPGFSRGSKFEKTKSKDDEGDARDVE DTLEQEEKDTDEPTQEGVSPGEDRNLQITEELQEDLSSDEEEEDIDSLLPVEYPALEPRG QLLAPTSKKGGKEWAHVVDINKEITNFYDLVPDMAREWPFELDTFQKEAVYHLENGDSVF VAAHTSAGKTVVAEYAIALAAKHMTKAIYTSPIKALSNQKFRDFRTTFEDVGILTGDVQI NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVT LILLSATVPNTYEFASWVGRTKKKDIYVISTPKRPVPLEHYLWADKSMHKIVDSNKNFIE KGWKKADDILSGRDKLRAQKAAEAQSNTNNRGGHGDRGRGGQPQRGNQRGGAQRGGTQQR GSAQQRGRGQPVSRGTGNIARTGRGGGRTTVAQDRNIWVHLVQHLRKENLLPACIFVFSK RRCEENADSLSNQDFCTASEKSTIHMIIEKSLARLKTEDRGLPQIRRVRELLSRGIGVHH GGLLPIIKEIVEILFAKTLVKVLFATETFAMGLNLPTRTVVFSGFRKHDGRSFRDLLPGE YTQMAGRAGRRGLDTVGSVIIVASGKDEAPPAGTLRRMILGDPTKLRSQFRLTYNMILNL LRVEALKIEEMIKRSFSENATQALLPEHQKQVQLSEASLEKIKREPCAICDIDMETCHEA AVEYSRLTTKLHINLHASPVGRRLFFAKTVVVFKKNGIRTVGMLARDGMAPGPNLGLQVF EFGPISASRHPSDILPYLPAFRHLFSPLSTNPNEMVLKTYKIPLEDLECVTTTVVKIGGP TWYLNIKKESLKVAQKDLVPLCTSWEASAWDELAWDRVKELQIVEILNQRQAQVAIVESS ECLQCPEFLKHFEMQHDEWQVKENISQLKQLMSDQNLQLLPDYEQRILVLKDLGFVDEAS RVQLKGKVACEIHSADELVLTELILENVFAEYEPEEIVALLSAFVFQEKTESVPTLTPRL EKGKEAIIKISEKVNDFQIQHQVILSSEDSNDFASKPRFSLVEVVYEWARGMSFNRITDL TDVMEGTIVRVITRLDETCREVKSAAKLVGDPTLYSKMQQAQELIKRDVIFAASLYM NT seq 3954 nt NT seq  +upstreamnt  +downstreamnt atggcagaagaccgaggtttactagatgctgtccagcaggttcacactgcggcaaataat ttggccggagatgataccctggacgtctggataacgagagcaggaaatgaagaactcgca aatggagagagggaagctgggacaagatttcaatcgcggtcccgaagatgcgaggtccaa tctgatgaggagctgaaagcagagctggagcgggagtttctgaacccctctcctcggttt agtaccccgtggttgaataagttgcaacagcgatgggaagttcctgtagactacacgaac ctctttgaactagcaccaccacagacccgcacaatcattcggtttacgcgggaagggctg gaaggcagggtcactggttatcgcgaggtaactgttcctgcgagcagcgctacagcgaaa aattctacgtcattgcttagacgacctgcgggccgtgctgatttcgtccgcggcgctgcc ggattctttccgtttgcaccaggcgggctggaaggcgtggaagcgattgctgaacttgag tctgatgctcagaatgatgggcgtcagacttctgcgggaggaaaaggatcgagattagac cgaatcatcaattttggcgtggaaggtgggctgttggaggttcccccgggattctcccgg ggatcgaaattcgagaagactaagagcaaggatgatgagggtgatgcacgagacgtggaa gacacgttagaacaggaggagaaagacacggatgaaccgacgcaggagggggtttctcct ggtgaagatagaaacctccaaatcaccgaagaactccaagaggatttatccagtgatgaa gaggaagaagatatcgattctttactacccgttgaatacccggccttggaaccaaggggc cagctccttgcgcctacttcgaaaaaaggaggtaaagagtgggctcatgtggtggatatc aacaaggagattacaaatttttacgacctggtaccggatatggcaagggaatggccgttc gaactggatacttttcaaaaggaggcagtctaccacctggaaaatggagattctgttttc gttgccgctcacacatctgctggaaaaacggttgtggcagagtatgcgattgcgctcgct gccaaacacatgacgaaagccatttatacttctccgattaaagccttaagtaatcaaaag ttccgcgacttcagaactacttttgaggatgttggaatcctgacgggagacgtccagatt aaccccgaggcgagctgcttgatcatgactacagaaattctgaggagtatgctttaccgc ggagctgatctaattcgcgatgtagagtttgtcatttttgacgaagtgcactatgtaaat gacctggaaagaggcgtggtttgggaagaagtcatcattatgctaccggaacacgtcact ctaattctgctctcagctacggttccaaacacatacgaatttgcctcttgggttggccgg accaagaagaaggatatctatgtcatctcgacacccaagcgcccggtcccattagagcat tacctgtgggcggataaaagcatgcacaaaatcgtcgactcaaacaaaaatttcatcgag aagggatggaagaaagcggatgatattttgtccgggcgagacaaacttcgtgctcagaaa gcggcggaagcccagtccaataccaacaatagaggcggtcatggagacaggggccgtggt gggcaaccccaacgtggcaaccaacgaggtggggctcagcgtggaggcacccaacaaaga gggagtgcacagcagcgcggcagaggccaacctgtgtctcgtggaactggtaatatcgct agaacaggccgaggcggtgggcgcacgactgttgcacaagaccgaaatatctgggtccat cttgtacaacacttgcgaaaggaaaacctgttacccgcgtgtatttttgtgttttccaag agaagatgcgaggaaaatgcagattctttatctaatcaggatttctgcacggcatcggaa aagagcactatccatatgatcattgaaaagtcgctggcaaggctgaagacggaagataga ggacttccacaaattcgtcgggttagggagctgctgagtagaggtattggggttcaccat ggcggcctcttacctatcatcaaggaaattgttgaaatattattcgcaaaaaccttggtg aaagtgctgtttgctacagaaacttttgcaatgggtctgaacctgccgacgaggactgtc gtattttctggcttccgaaaacatgacggtcggtcatttagagatctccttccaggtgaa tatacccaaatggcagggagagcgggtcgacgtgggcttgacacagtcggatctgtaata attgttgcgtctggcaaggatgaggcgcctcccgccggcaccttacgacgcatgattcta ggcgatccgaccaagcttcgatcccaattccgacttacctataacatgatattaaatctc ctgcgggtagaagccttgaagattgaagagatgatcaagcgaagcttcagtgaaaatgca acccaagcactcctgccggagcaccagaaacaagtgcaactgtccgaagctagtttggag aaaataaaacgggagccatgcgccatatgtgatatcgacatggagacttgtcacgaagcc gcagtggagtattcgcggctaactaccaaacttcatatcaacctacatgcatctcctgtg gggcgacgcttattcttcgccaagaccgtggttgtctttaaaaagaacggcatcaggaca gttggtatgctcgctcgcgatggtatggctcccgggccaaaccttggcctacaagtgttc gaattcggcccaatcagtgcgagccggcatccaagtgatatccttccgtatctaccagca tttcgacatttattttcgccgctgtcaacaaatcctaacgagatggtgttgaagacttac aagattccacttgaggaccttgaatgtgtaaccacgacggttgtaaaaataggtggccca acttggtatctgaatattaagaaagagtcattgaaagttgcacaaaaggatcttgtacct ctatgtacctcgtgggaggccagtgcatgggacgaattggcatgggaccgagtcaaggaa cttcaaatagtcgagattcttaaccagcggcaggcacaagtcgctatcgtcgaatccagc gagtgtctgcagtgcccagaatttctgaaacattttgagatgcaacatgacgaatggcag gtaaaagagaacatttcacagttaaaacagttaatgtcggatcaaaatctgcaacttcta ccggactacgagcagcggattttggtcttgaaagatcttggtttcgttgatgaggcttct cgagtccaattgaaggggaaggttgcctgtgagatccattcagcggacgaactcgtcctg acagaattgattctggaaaatgtgtttgcagaatatgagccagaagagattgttgcactg ctgtccgccttcgtcttccaggagaagaccgagagtgtcccaacgctaacaccacggctt gaaaaggggaaagaggccataatcaagatatcggaaaaggtaaatgactttcaaatccaa caccaagtgatcctctcgagcgaagactccaacgacttcgcgagcaagccacgattcagc cttgtcgaggtggtgtacgagtgggctcggggaatgtcattcaaccggatcacagacttg actgatgtgatggaaggcacaattgtacgtgttatcacacgactggacgaaacgtgtcgg gaggtgaagagtgcagccaagctggtgggcgacccaacgctgtatagcaagatgcaacag gcacaggaactgattaagcgcgacgtaatattcgcggcatctctttacatgtaa

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