Alkalicoccobacillus gibsonii: BGM20_02790
Help
Entry
BGM20_02790 CDS
T04820
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bgi
Alkalicoccobacillus gibsonii
Pathway
bgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BGM20_02790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgi03019
]
BGM20_02790
Messenger RNA biogenesis [BR:
bgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BGM20_02790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AOL29620
LinkDB
All DBs
Position
513778..515445
Genome browser
AA seq
555 aa
AA seq
DB search
MKKKNTENVRIIALGGVGEIGKNLYVIEIDSDIFVVDAGLMHPENEMLGIDVVIPDISYL
IERADRVKAIFLTHGHDENIGGVFYLLNKLSVPVYGTKLTLALLREKLKQYGHNRKTDLR
EIHSKSVITFESTKVSFFRTIHSIPDSVGVSFKTSLGSIVCTGDFKFDQTPALNQTCDIG
EIAKIGNSGVLALLSDSANAERPGYTPSEAAVSGEISDALYNSQNRVIIAVFASNINRIQ
QVIHAAAQNGRKIAVAGKNLQSVLQLARKLGYIEADDELFISVQDVKKYPKREVAIITAG
SQGEPLAALTRMANKAHKQLNIEEGDTVVIASTPIPGQELIYSKTVDLLARAGAQVIFAQ
KRVHVSGHGSQEELKLMINLLKPKYLIPVNGEYRMQKAHSKIAEETGMKRSDIFLIEKGD
VVEFRGQNVKIGDKVPYGNILIDGLGVGDIGNIVLRDRRLLSQDGILIVVITLDKQKKHL
VSGPEIITRGFVYVRESEGLIVQATELVRSIVTEATETSNVEWSTLKQAMRDALNQFLYE
KTKRKPMIIPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaagaaaaatacagaaaacgttagaattatcgcccttggcggtgtcggagagatt
gggaagaacctttatgtcattgaaattgactcagacatatttgtcgttgatgccggtctt
atgcatccagaaaacgaaatgctcggtattgatgtagtgattcctgacatatcatatttg
attgaacgggctgaccgcgtcaaggcaatctttttaacgcacgggcacgatgaaaatatc
ggcggcgttttttacttattaaacaagctgtccgttccagtgtacggaacaaaattgacg
cttgcactgttaagagagaaattaaaacaatacggacataaccgaaaaactgatttaaga
gaaattcactccaaatctgtcattacatttgaatcaacaaaggtatcgttctttagaacg
attcacagcattcctgattctgtaggtgtgagctttaaaacatcacttggatctattgta
tgcacgggagacttcaaatttgaccaaacacctgcacttaatcagacgtgcgacattggc
gagatcgccaagatcggcaatagcggcgtgctcgctctgctttctgacagtgcaaatgcg
gaacggccgggttacaccccttcggaagcggctgtcagcggagaaatttcggatgcgctg
tataattcacagaaccgggtgattattgctgttttcgcatccaatattaaccggattcag
caagtcattcatgcagcggctcaaaatggcagaaagattgccgtagccggaaaaaatctt
caatctgtcctgcagctcgcgagaaagttaggatacattgaagcagatgatgaattgttt
atttctgtacaggatgtcaaaaaatatccgaagcgcgaagtggccattattacagccgga
agccaaggtgaaccattagctgctttgacaagaatggcaaacaaagctcacaaacagctg
aacattgaagaaggggatacggtggtcattgcgtcaactccgattcccgggcaggaactc
atttactctaaaacagtagatcttcttgcgagagccggtgcacaagtcatctttgcccaa
aagcgtgttcatgtatcaggccacggctcacaagaagagttaaagctgatgatcaacctg
cttaaaccaaaatatttgattcctgtaaacggcgaatacagaatgcaaaaagctcattca
aaaatcgctgaagaaaccggcatgaagcgcagtgacatcttcttaattgaaaaaggcgac
gtcgttgaattccgcggccaaaacgtaaaaattggggataaagttccttacggcaatatt
ttaattgatggtttaggtgtcggtgatatcggcaatatcgtattgagagaccgtcgcttg
ctttcacaggacggaattttaatcgttgtcattacacttgataaacaaaagaaacatctt
gtatcaggaccagaaattatcactcgcggctttgtttatgtaagagagtctgaaggtctt
atcgtacaggctactgagcttgtccggtccatcgtgacagaagcgactgaaacatcaaat
gtcgaatggtcaacgttgaagcaggcaatgcgggatgctttgaaccaattcctttatgaa
aaaacgaaacgtaaaccgatgatcatcccaattattatggaagtataa
DBGET
integrated database retrieval system
