Alkalicoccobacillus gibsonii: BGM20_02870
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Entry
BGM20_02870 CDS
T04820
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
bgi
Alkalicoccobacillus gibsonii
Pathway
bgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BGM20_02870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgi03019
]
BGM20_02870
Messenger RNA biogenesis [BR:
bgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BGM20_02870
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH_NusA_2nd
KH_2
Motif
Other DBs
NCBI-ProteinID:
AOL29634
LinkDB
All DBs
Position
531673..533235
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AA seq
520 aa
AA seq
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MTPIMMVLISILLILLGLVVGYFVRKTIAEAKIAGARGAAEQILEDAKRDAEALKKEALL
EAKDEIHKLRIDAEQEVRERRNELQKQENRLLQKEENLDRKHEGIDKREAMLEKKDHSLN
ERQQHIEEMESKVDEMIRMQQSELERISSLTRDEAKQIILERVENELSHDIAIMTKETEN
RAKEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLT
GIDLIIDDTPEAVILSGFDPIRRETARIALDKLVQDGRIHPARIEEMVEKSRREVDDYIR
EMGEQTTFEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAFLAGLMASELGEDAKL
AKRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVINSIASHHGDEEPTSIIAVLV
AAADALSAARPGARSETLENYIRRLEKLEEISESYEGVEKSFAIQAGREVRIMVKPDSIN
DLEAHRLARDIRKRIEDELDYPGHIKVTVIRETRAVEYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgaccccaattatgatggttctcatctccattttgctgattctactcggtttagttgtt
ggctactttgttcgtaaaaccattgccgaagcgaaaattgcgggcgcacgcggtgcagcc
gagcaaattcttgaagatgcgaagcgtgatgctgaagcactgaaaaaagaagctctgctt
gaagcaaaggatgaaatccacaaacttcgaatagatgctgaacaggaagttcgtgaaaga
cgaaatgagcttcaaaaacaagaaaaccgtttactccaaaaggaggaaaaccttgatcgc
aaacatgagggaattgataaacgggaagcgatgttggagaagaaagatcattctctgaat
gaacgacaacaacatattgaagagatggaaagcaaagtggatgagatgattcgtatgcag
cagtctgagttggaacgaatttcgagtctgactcgtgatgaagcgaaacaaatcattctt
gagcgggttgaaaacgagctttcacatgacatcgccatcatgacaaaagaaactgaaaac
cgtgcgaaagaagaggcggataagaaagcgaaaaacattctttcactcgccttacagcgc
tgcgcagcggaccacgttgccgaaacaacggtatcagttgtcaatcttccaaatgatgag
atgaaaggacgtatcatcggacgggaagggcgtaacattcgtacgcttgaaacgctgaca
ggaattgacctgattattgatgatacgcctgaagctgtcattctttccggatttgatccg
atcagacgtgagacagccagaattgctcttgataaactcgttcaggatggccgtattcat
ccggcacggattgaagaaatggttgaaaaatctcgccgcgaggtcgatgactatattcgt
gagatgggtgagcaaacgacatttgaggttggcgttcacggcctccacccagatctcatc
aagatcctcggccgcttaaagttccgtacaagctacggtcaaaatgtgcttaagcattcc
atggaagtcgcattcttggccggtctaatggcatcggagcttggtgaagacgcaaagctt
gctaaacgtgcgggtcttcttcacgacatcgggaaagcaattgaccatgaagtagaagga
agccacgttgaaatcggggtagagcttgcgaccaaatataaagagcacccagtcgtgatt
aacagtattgcatcacaccacggggatgaggagccgacttccattattgctgtactggta
gctgcagcagatgcgctttccgctgcaagacctggcgcaagaagtgagacgctcgagaat
tatattcgaagacttgaaaaactcgaagaaatttctgagtcctacgaaggtgttgaaaaa
tcatttgccattcaggctggacgcgaagtgcgtattatggtgaagccggattcaattaat
gatcttgaggctcatcgactggcgcgagatatccgcaagcgaattgaggacgagctcgat
tatccaggtcatattaaggtgacagtaatcagagagactcgagccgtagagtatgcaaaa
taa
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