Alkalicoccobacillus gibsonii: BGM20_06340
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Entry
BGM20_06340 CDS
T04820
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
bgi
Alkalicoccobacillus gibsonii
Brite
KEGG Orthology (KO) [BR:
bgi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgi03019
]
BGM20_06340
03009 Ribosome biogenesis [BR:
bgi03009
]
BGM20_06340
Enzymes [BR:
bgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BGM20_06340
Messenger RNA biogenesis [BR:
bgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BGM20_06340
Ribosome biogenesis [BR:
bgi03009
]
Prokaryotic type
rRNA helicases
BGM20_06340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_22
PhoH
Motif
Other DBs
NCBI-ProteinID:
AOL30268
LinkDB
All DBs
Position
complement(1236529..1237845)
Genome browser
AA seq
438 aa
AA seq
DB search
MKETKFELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLL
PLLNKIDPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSID
KLKIQPHLVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMPED
LQMLVFSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDKLLFDIM
SHLNPYLGIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTYII
ATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELTDEDALVRL
EKMGIEFEYLELEKGEWKKGDDRQRRKKRKKTPNEADEIAHRLVKKPKKVKPGYKKKMSY
EMEKIKKKQRRNQSKKRK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaacgaaatttgaactttatgaattgaaaccatttattatagatgcagtacat
cgccttggtttttacgaaccgactgatatccagaaaaggctgattcctgcagtgttaaaa
aaagaaagcgtcatcggccagtctcagacgggtactggaaagactcacgcttatttactg
cctttattaaacaaaatcgatcctgctaaggatgtcgttcaggtagtcattacggctccg
acaagagagcttgccaaccagatttatcaggaagcgcttaaaatcacgcagggtgaagaa
ggaagtcagattcgctcgaaatgttttatcggaggcactgataaacaaaaatcaattgat
aaattgaaaatacagccgcatcttgttgtcggtacacctggacggattgctgacttaatc
aaagaacaggcgttaagtgttcataaagcggaatctcttgttattgatgaagcggattta
atgctggacatgggattccttgcagatgtagattacatcggttcccgcatgcctgaggat
ctgcaaatgcttgtgttctcagcgaccataccggaaaagctgaaaccattcttgaagaaa
tacatggaaaatccgaaatacgcccatgtggagccaaaacaggtgactgctgcgaaaatc
gagcatatcctcattccttcgaaacatcgtgacaaggacaagctcctttttgacatcatg
tcgcatctgaatccatacctggggattgtgtttgccaacacgaaaaatacggctgaccat
attgcccagtatctgactggcaaaggcatgaaaatcggcttgctgcacggcggattaaca
ccacgtgagcggaaaaaagtcatgaagcagatcaatgatttggaattcacatatatcatt
gcaactgaccttgccgcaagaggtattgatattaaaggtgtcagccatgttatcaactat
gagctgccggatgatctcgatttctatgttcaccgtgtgggcagaacggctcgtgccggc
tcatcaggacaagcgatgaccatttatgagcttactgatgaggatgcattagtaagactt
gaaaaaatgggcatcgaatttgagtacttagagcttgaaaagggcgaatggaaaaaaggc
gatgaccgtcagcgccgcaaaaaacgtaaaaaaacgccgaatgaagcggatgaaattgct
catcgtctcgtgaaaaagccgaagaaggttaagcctgggtataaaaagaaaatgagctat
gagatggagaaaatcaagaaaaaacagagaagaaaccaatctaagaaaagaaagtag
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