Alkalicoccobacillus gibsonii: BGM20_07720
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Entry
BGM20_07720 CDS
T04820
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bgi
Alkalicoccobacillus gibsonii
Pathway
bgi03410
Base excision repair
bgi03430
Mismatch repair
bgi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BGM20_07720
03430 Mismatch repair
BGM20_07720
03440 Homologous recombination
BGM20_07720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgi03400
]
BGM20_07720
DNA repair and recombination proteins [BR:
bgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BGM20_07720
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BGM20_07720
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BGM20_07720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
tRNA_anti-codon
PGM_PMM_II
Motif
Other DBs
NCBI-ProteinID:
AOL30525
LinkDB
All DBs
Position
complement(1480321..1482681)
Genome browser
AA seq
786 aa
AA seq
DB search
MLASKMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFYDP
FEMKGMKEAADRIKQAISQQEKIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFK
EGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKELGLDVIITDHHEPGPELPDVR
AIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLERLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLM
SEDSFEAEELAAEIDQLNKERQKMVSKMTDEAIDMVEQQGLDQTAIVVAKAGWNPGVVGI
VASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFESLSECRDILPHFGGHPMAAGM
TLKAEDVPDLRSRLNEIADNTLTEEDFIPVQEVDLVCGVEDITVESIAEMNMLSPFGMLN
PKPHVLVENAVLEDVRKIGANKTHVKMTIRNESSQLDCVGFNKGELEEGIVPGSRISIVG
EMSINEWNNRKKPQLMIKDAAVSEWQLFDLRGKRTWEDTVSALPSAKRAIVSFKEDSTTL
LQTEDLRREVHVISSKDQAKAFDLDGAYIVLLDPPPSLDMLARLLEGKAPERIYFIFLNH
EDHFLSTFPARDHFKWYYAFLLKRGAFDVKKHGSELAKHKGWSVETINFMTKVFFDLGFV
KIENGVLSVVSGAKKRDLTDSQTYQAKQQLMELDQKLNYSSAEELKEWLNKLMKQDSEAY
ESTRRT
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgttagcgtcaaaaatgcgatgggaaatccagcgaccagatcaggataaggtcaaatca
ctcacagaacaattgcatataacacctcttgttgcgtccctgcttgtaaaaagaggcttt
gatacggcagaaagcgctaggctgtttttacatacaaaggatgccgatttttatgatcct
tttgaaatgaaaggcatgaaagaagcggcagatcgaataaaacaggcgatttcacaacaa
gaaaagattatgatatatggcgattatgacgccgatggggttacaagtacgtcagtgatg
cttcacacgctgcaaaaactgtcggctcaagttgatttttatatacctgaccgttttaaa
gaaggatatggacctaatgaacaggcgtttcgttcgattaaagaacggggcttctctttg
atcattacggttgatacaggaattgccgctgtgcatgaagcgaaggtggcaaaggaactc
ggactggatgtcatcattaccgatcatcatgaaccgggaccggagcttccggatgtccgt
gcgatcgtccacccgaagcagcctggctgcacttacccgtttaaagagcttgccggggtt
ggagtcgcgtttaagcttgcccacgctttattgggtgaacttcctgatgaactgcttgac
ctggcggctatcggcaccattgccgatctagtcccgctgcatgacgaaaacagattaata
gcaacactaggacttgaaaggcttcgacggacaaatcggctcggcttaaaagagctgatt
aagctgtcaggcggagacatcggagaagcgaacgaagaaacagtcggatttcagctcgca
ccaaggctgaatgccgtcggaagaatcgaacaggcggatcccgctgttcatttgcttatg
tcagaggattcgtttgaagcggaagagcttgccgcagaaattgaccagctgaacaaagag
cgccaaaaaatggtcagcaaaatgacggatgaagcgattgacatggttgaacagcaaggg
ctcgatcaaactgcaattgtcgtggccaaagccggatggaacccgggagtcgtcgggatt
gtggcttcaaagcttgtggaccgtttctaccgaccggccattgttcttggtattgatgaa
gaaaagggaatcgctaaaggttcggcccgaagcatcagaggatttaatttatttgagagc
ctttctgaatgcagagatattcttcctcatttcggcggccatccaatggctgcggggatg
acgctgaaagccgaagatgtgccggatttgcgaagcaggctgaatgaaatagcggacaat
acgcttacggaagaggattttattcccgtacaggaagtcgaccttgtctgcggcgtcgaa
gacattacagttgaaagcatcgcagaaatgaacatgctgtctccttttggcatgctgaac
ccgaaaccgcacgttctcgtagaaaacgcagtactggaagatgtccgcaagataggggca
aataaaactcatgtcaaaatgacgatcagaaacgagtcgtcccagcttgattgcgtcggt
tttaataaaggcgagcttgaagaaggcatcgtaccgggttcaagaatttccattgtcggt
gagatgtcaatcaacgaatggaacaatcgaaaaaagccgcagcttatgataaaggatgcc
gctgtttctgaatggcagctgtttgatttaaggggaaaacggacgtgggaagacacagtt
tccgcccttccatctgctaaacgggccattgtctctttcaaagaagactcaacaacatta
cttcaaactgaagaccttcgccgagaagtgcacgtcatcagttctaaagatcaagcaaag
gcgtttgacctcgatggtgcatatattgtattactggatccgccgccttcgctggacatg
ctcgcacgtttgctggaaggaaaggcgcccgagcggatatattttatttttctcaatcat
gaggaccactttttatcaacttttcccgcaagagaccactttaaatggtattatgcgttc
ttgctgaaaagaggcgcttttgacgtgaaaaaacacggttcagagcttgcaaaacataaa
ggctggtccgttgaaacaatcaatttcatgacaaaggtgttttttgatctcggttttgtt
aaaatagagaatggtgtgctgtctgttgtgagcggagcaaagaaacgcgacttaacagac
tcacaaacatatcaggcgaaacagcagctgatggaactggatcaaaagctgaattattct
tctgctgaagagctgaaggaatggctgaataagctgatgaaacaagattcagaggcttat
gaaagtacgaggaggacataa
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