Alkalicoccobacillus gibsonii: BGM20_08485
Help
Entry
BGM20_08485 CDS
T04820
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bgi
Alkalicoccobacillus gibsonii
Pathway
bgi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BGM20_08485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgi03400
]
BGM20_08485
Enzymes [BR:
bgi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BGM20_08485
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BGM20_08485
DNA repair and recombination proteins [BR:
bgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BGM20_08485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
Mrpl_C
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
AOL30667
LinkDB
All DBs
Position
complement(1629363..1630199)
Genome browser
AA seq
278 aa
AA seq
DB search
MDVPELPEVETVRRTLTGLVKGKTIKSVEIRWPNIIKRPAEPEEFARKLAGETIQSIGRR
GKFLLFHLDHYVMVSHLRMEGKYGLHQAEEPDDKHVHVIFTMTDGTQLRYRDVRKFGTMH
LFKPGEEAGELPLSQLGPEPDAEEFTSAYLKERLAKTNRAVKTALLDQKTVVGLGNIYVD
EALFRAGVHPEIKANQLSDKTIKTLHAEIKNTLQEAIDAGGSTVRSYINSQGEIGMFQLQ
HFVYGKKDEPCKNCGTMISKIVVGGRGTHFCAKCQKKK
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgccggaattaccagaggttgagacggtccggcgcactctgaccgggcttgta
aagggaaaaacaatcaaatcggtagagatcagatggccgaatatcatcaaacggcctgcc
gaaccggaggaatttgcgcgaaaactagcaggagaaacgatacagtccatcggaagacgg
ggaaagtttttactgtttcatttagatcattatgttatggtttctcaccttcgaatggaa
ggaaaatacggtcttcatcaagccgaggagcctgacgataaacacgtgcatgtcatattc
acgatgacggatggaacccagctccggtacagggatgtgcggaaatttggaaccatgcac
ttatttaaaccgggagaagaagcgggcgagctcccgctttctcagttaggtccggagccg
gatgcagaagaatttacgagtgcgtatttaaaagaacggcttgcgaaaacaaaccgcgct
gtcaaaactgccctactggatcaaaaaacggtagttggactaggaaatatttatgtggat
gaggctcttttcagagcgggtgttcatcccgagataaaagcaaatcaattatcagataaa
acaatcaaaacccttcacgctgaaatcaaaaacactctgcaggaggcgattgatgcgggc
ggaagcacagtccgttcatatatcaactcccaaggggaaatcggaatgttccagctgcag
cattttgtgtacggaaaaaaagacgagccatgcaaaaattgcggaacgatgatttcgaaa
attgtcgttggaggaagaggcacgcatttttgcgcaaagtgccagaaaaaaaagtag
DBGET
integrated database retrieval system
