Alkalicoccobacillus gibsonii: BGM20_13830
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Entry
BGM20_13830 CDS
T04820
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bgi
Alkalicoccobacillus gibsonii
Pathway
bgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BGM20_13830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgi03019
]
BGM20_13830
03009 Ribosome biogenesis [BR:
bgi03009
]
BGM20_13830
Enzymes [BR:
bgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BGM20_13830
Messenger RNA biogenesis [BR:
bgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BGM20_13830
Ribosome biogenesis [BR:
bgi03009
]
Prokaryotic type
rRNA helicases
BGM20_13830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AOL31646
LinkDB
All DBs
Position
complement(2684143..2685582)
Genome browser
AA seq
479 aa
AA seq
DB search
MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL
CELANWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQK
SHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTML
FSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENP
DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVA
ARGIDIENISLVINYDLPVEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG
FEIQKIEAPSQEEVARKKPEFLAKLNDRPESKKDKSEELNKDIMKLYFNGGKKKKIRAVD
FVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKNTTVKGKQLKVNKANK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgagtcattttaaaaactatcaaatcagtcatgacattttacgagcattggaaggactg
ggatatacagaaccgaccaaggtgcagcagagtgtgatccccgctgcccttgaacgaaag
gatcttgtcgtcaaatcacagacaggaagcgggaaaacggcttcgttcgggattcctctc
tgtgagctggcgaattgggatgaaaacaagccgcaggcgcttattttaacaccgacccgt
gagcttgcggtgcaagtaaaggaagatatcacgaacatcggacgatttaaacggatcaaa
gcgacagccgtatttggaaaatcctcctttgataaacaaaaagctgagcttaagcaaaaa
agccacattgttgtcggcacgccgggacgtgttctggatcatatcgaaaaaggcacgctg
ccgttggatcgtctctcttatttggtcattgatgaagcggatgagatgctgaatatgggc
ttcattgagcaggtggaggcgattatcaagcatctgccgactgagcgtacgacgatgctg
ttttcagcgacgcttccgcaggatatcgagaagctgagccgtcaatatatgcaaaacccc
gagcatatcgaagtcaaagcggccggcctaaccacaaggaatattgaacatgcggtgatt
caagtaagagaagagaataaattttcattgctgaaagatgtgctgatgacggagaatccc
gacagctgcatcattttctgccgaacgaaggagcacgtcaatcagctgaccgatgaattg
gatgacttaggatatccatgcgataaaattcacggcggaatgattcaggaagaccgattc
gacgtcatgaatgaatttaaacgtggcgagtaccgttacttagtcgcgacggatgtcgcc
gcgcgcgggattgatattgaaaatatctcccttgttatcaactatgatctgccggttgaa
aaggaaagctatgtccaccgcacgggccgaacgggacgcgcagggaacaaaggaaaggcc
atttcgtttgtcacggccttcgaaaaacggtttttagccgacattgaagaatatatcgga
tttgaaatccaaaaaatagaagcaccttctcaagaggaagtggcaaggaagaaaccagaa
tttctagctaaactgaatgaccgtccggaaagcaaaaaggacaaaagtgaagagctgaat
aaagacattatgaagctgtattttaacggcggaaagaaaaagaaaatcagagccgttgat
tttgtaggaacgattgccaaaattgacggtgtgtcagctgacgacatcggcatcattacg
atcatggataacgcctcatacgttgagattttaaatggtaaaggccctcatgttctcaaa
gtgatgaagaacacaaccgtcaaagggaaacagctgaaggtgaataaagcgaataaatga
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