Alkalicoccobacillus gibsonii: BGM20_17390
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Entry
BGM20_17390 CDS
T04820
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bgi
Alkalicoccobacillus gibsonii
Pathway
bgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BGM20_17390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgi03019
]
BGM20_17390
03009 Ribosome biogenesis [BR:
bgi03009
]
BGM20_17390
Enzymes [BR:
bgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BGM20_17390
Messenger RNA biogenesis [BR:
bgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BGM20_17390
Ribosome biogenesis [BR:
bgi03009
]
Prokaryotic type
rRNA helicases
BGM20_17390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
AOL32263
LinkDB
All DBs
Position
3383128..3384612
Genome browser
AA seq
494 aa
AA seq
DB search
MTITFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIP
LVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKK
NPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTL
LFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQS
PELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDV
AARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTT
KRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDHDAVTVVAAAI
KMATKEPDDTPVRLTDEAPMVSKRYKNQRSSKRRDGQGGGYRGGKGKSNNRSSYDKKRSN
DRRSSGDRRQKKSY
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
ttgactataacgtttcaagattttaatttaagttctgatctcatgaaagcaattaatcgt
atgggatttgaagaagcaacaccgattcaggcacaaacgataccgctcggactttcaaat
aaagacgtcattggacaagcgcaaacaggtacaggtaaaacagctgcgtttggtataccc
cttgttgaaaaaattaaccccgagtctcctaatattcaagcaatcgtaatcgcgccaacc
cgtgaattagccattcaagtatctgaagaattgtataaaatcggacaagataaacgtgcg
aaggttcttcctatttacggcggacaggatattggacggcaaatccgggcgttaaagaag
aatccgaatattattgtcggaacacctggccgtcttcttgaccacatcaaccgccgcacc
attcgtttaaacaacgtaaataccgttgtaatggatgaagcggatgaaatgctgaacatg
ggattcattgacgatattgaatctatcctttcaaacgtgccaagcgagcatcagacactt
ctgttctctgccacaatgcctgcgccgatcaaacgcattgcagagcgcttcatgactgag
ccggaacacgtaaaagtaaaagcgaaagaaatgacggtttctaacattcagcagttctat
ttggaagtgcaagaacgcaaaaaattcgatacactgactcgccttcttgatattcagtct
cctgagcttgcgatcgtattcggacgtacaaaacgccgtgtcgatgagctggctgaagct
ctgaaccttcgcggatatgcagctgaaggaattcacggtgacttaacgcaggcgaaacgt
atggttgcgcttcgtaaatttaaagaaggcgcaatcgaagttcttgtcgcaactgatgtt
gccgctcgcggacttgatatctcaggtgttacacacgtatacaacttcgacgtgcctcaa
gatcctgaaagctacgttcaccgtatcggaagaacgggccgtgcaggaaaaacaggtatg
gcaatgacgttcattacaccgcgtgagaaaagcatgcttcgcgcaattgaacaaacaaca
aaacgcaaaatggaccgcatgaaggagcctacacttgatgaagcgttagaaggccagcag
caggttactgttgaacgtcttcgcacgacaatcagtgaaaacaacctgaacttctacatg
acagcggcagctgagctgcttgaagatcatgatgcagtaacagtggttgcggcggctatc
aaaatggctacaaaagagccagacgacacaccggttcgcttaacagacgaagcgccgatg
gtcagcaaacgctacaagaaccagcgctcttctaaacgcagagacggtcaaggcggcggc
taccgcggcggaaaagggaaaagcaacaaccgttcttcctatgacaaaaagcgttcaaac
gatcgccgttcttcaggtgacagacgccagaaaaaatcttactaa
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