Brenneria goodwinii: AWC36_07030
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Entry
AWC36_07030 CDS
T05061
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bgj
Brenneria goodwinii
Brite
KEGG Orthology (KO) [BR:
bgj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgj03019
]
AWC36_07030
Enzymes [BR:
bgj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AWC36_07030
Messenger RNA biogenesis [BR:
bgj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AWC36_07030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
T2SSE
NACHT
AAA_25
PhoH
Motif
Other DBs
NCBI-ProteinID:
ATA23876
UniProt:
A0AAE8JMZ9
LinkDB
All DBs
Position
1586655..1590542
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLNALSSQLSELMLRDGQRLRRRLQGAAKVGSLLAQTVIAQEIEGEIVSARQRVENR
RASCPSINYPEQLPVSQKKDEILHALREHQVIIVAGETGSGKTTQLPKICLELGRGVRGL
IGHTQPRRLAARTVADRIAAELETPLGGCVGYKVRFNDQVGDNTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRQLLPKRPDLKIIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVDVRYRPVVEDAEDSDRDQLQAIFDAVDELSREGPGDILIFMSGEREIR
DTADALNKLDLPHTEILPLYARLSNQEQNRVFQSHHGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVAAGVCIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELSAIQLAENGHYH
LTPLGRQLAQLPIDPRLARMVLEARRTGCVREVMVITAALSIQDPRERPLDKKQASDEKH
RRFADKESDFMAFVNLWDYLREQQKALSSSQFRRLCRSDYLNYLRVREWQDVYTQLRQVV
KEQGLPINSEPADYRSIHCALLTGLLSHVGQKDIDKQEFSGARNTRFAIFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIDPEWIEPLAQHLIKRSYSDPHWEKAQGVVMAQEKVTLF
GLPIVAARKVNYSQIDPVLARELFIRHALVEGDWQTRHAFFRANLKLLAEVEELENKSRR
RDILVDDETLFAFYDRRLPHDIISARHFDKWWKDASRQDADLLNFEKSMLIKDGADNVSA
LDYPNFWHQGSLKLRLTYQFEPGTDADGVTAHIPLPILNQVRDEGFEWQIPGVRRDLVIA
LIKSLPKPMRRNFVPAPNYADAFLARTTPLEKGLLDALERELRLMTGVSVPREEWHWEQV
PDHLKMTFRVIDEKNRALREGKDLNALKEQLKDKVQQTLSAVVDDGLEQRDLHVWSFGSL
PERYEQKRGGYSVKAYPALVDEKDSVAIRLFDTPHQQQQMMRQGLRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLDLIDDCISCAVDKLIGEFGGPVWQEAEFQRLHEKVRAEL
NDTVVDIAKQVEQILTAVFAINKRLKGRVDMAMALALSDIKNQLGGLVFRGFVTANGWQR
LPDVLRYLQAIDRRLEKLAIDVHRDRAQMLKVEQVQQAWRQWLNKLPAERRDDDDVKAVR
WMIEELRVSYFAQQLGTPFPISDKRILQAMEQIDA
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcaccgctcaacgcattatcttcgcagctcagtgagttaatgctccgtgatggg
caacgtctgcgccgccgtttacaaggggctgcgaaagtcggcagcctgctggcgcagacc
gttattgcacaggaaattgaaggtgagatcgtctcggcccgccagcgcgtggagaaccgt
cgggcaagttgcccctccatcaattatccggaacaattgcccgtcagccagaaaaaagac
gaaattctgcatgcgctgcgcgaacatcaggtgattatcgtggcgggggaaaccggatca
ggcaaaaccacgcagttaccgaaaatatgtctggaattggggcgcggcgtccgcgggctg
atcggtcacacgcaaccgcgccggctggccgcccgaacggtggccgatcgtattgccgcc
gagctggaaacgccgctgggcggatgcgtgggttacaaagtccgctttaacgatcaggtg
ggcgacaatacgctggttaagctgatgaccgacggtattctgctggcggaaatccagcag
gatcgcctgctgatgcagtacgacaccctgattatcgatgaagcgcatgaacgcagtctg
aatattgatttcattctggggtatctacgccagttgctgcccaagcgcccggatttaaag
atcatcatcacatcagccaccatcgatccgcagcgtttttcgcgccacttcaataatgcg
ccgattattgaggtttccgggcggacgtacccggttgatgtccgctatcgcccggtggtg
gaagatgccgaagacagcgaccgcgatcagctacaggctatttttgacgcggtggatgaa
ctgagccgcgaagggccgggcgacattctgatttttatgagcggcgaacgagagattcgc
gatacggccgatgccttgaacaagctggatttgccccataccgagattctgcctttgtat
gcccgcttatccaaccaggagcagaatcgggtattccagtctcatcacggtcgccgcatt
gtgctggcgaccaacgtggccgaaacgtctctgaccgtaccgggcatccgttatgttatt
gaccctggcacggcgcgcatcagccgctacagtttccgcaccaaggtgcagcgtctgccg
attgagccggtttcccaggcctcggccaatcaacgcaaagggcgttgcggacgcgtggcc
gccggggtttgtatccggctttattccgagcaggatttcctgtcacgtccggaattcacc
gatcctgagatcctgcggaccaatttagcctccgtcattctgcaaatgacctcattgggg
ttaggcgatattgccgcgtttccgttcgtcgaagcgccggataagcgcaacattcaggat
ggcgtgcggttgctggaagagctaagcgcgattcaactggcggaaaacggccactatcat
ttaacgccgctggggcggcaattggctcaactgcctatcgatccccggctggcgcggatg
gtgctggaagcgcgccgtaccggttgcgtgcgcgaagtgatggtgattaccgccgcgctc
tccattcaggatccgcgcgaacgtccgttggataaaaagcaggcgtcggatgaaaagcac
cggcgcttcgcggataaagaatccgattttatggcgttcgtgaatttatgggactatctg
cgcgaacagcaaaaagccttatcttccagtcagttccggcgcttatgccgaagcgattac
ctgaactatctgcgcgtacgcgagtggcaggatgtttatacccaactgcgccaggtggtt
aaagaacaggggttgccgatcaacagcgaaccggcggactaccgcagtatccactgcgcc
ttgctgaccggcctgttatcgcatgtcggccagaaagatatcgataagcaggagttcagc
ggcgcgcgcaatacgcgttttgcgatttttcccggctccgggttatttaaaaaaccgccc
aaatggacgatggtcgccgaactggtggagaccagccgcctgtggggacgcattgccgcc
cgtatcgatcctgaatggatcgagccgctggctcagcacctgattaaacgcagctatagc
gatccgcactgggaaaaggcgcaaggcgtggtgatggcgcaggagaaagtcacgctgttc
ggtctgcccattgtggcggcgcgcaaggtgaattacagccagatcgatccggtattggcg
cgcgagttgtttattcgccatgccctggtggaaggcgactggcaaacgcgtcatgccttt
ttccgcgccaatctgaaattgctggcggaagttgaagagctggaaaacaaatctcgtcgc
cgcgacattctggtggacgatgaaacgctgtttgcgttttacgatcggcgcttaccgcac
gacatcatttccgcccgtcattttgacaagtggtggaaagacgccagccgtcaggatgcc
gacctgctgaactttgaaaaaagcatgctgattaaagacggggcggataacgtcagcgcg
ctggattatccaaacttctggcatcagggaagcctgaaactgcgtctgacctaccagttt
gagccgggaacggacgctgacggcgtaacggcgcatattccgcttcccattcttaaccaa
gtgcgggatgaaggatttgaatggcaaattcccggcgtgcggcgcgacctggttattgcc
ttgatcaagtcattacctaaaccgatgcgtcgtaactttgtgccggcgccgaattacgcc
gacgcgtttctggcgcggaccacgccgttggaaaaggggctgctggatgcactggagcgc
gaactgcggctgatgaccggggtaagcgtaccgcgtgaagagtggcactgggaacaggtg
cccgatcatctgaaaatgacgtttcgcgttattgatgagaaaaaccgcgcgctgcgggaa
ggtaaggatctgaatgcgctgaaagagcagctcaaagacaaagtacagcagacgttgtcc
gcggtggtcgacgatgggttggagcagcgtgatttacacgtctggagttttggctcgttg
ccggagcgctatgagcagaaacgcggcggttactccgtcaaggcttatccggctttggtg
gatgaaaaggacagcgtggcgatccgtctctttgatacgccgcaccagcaacagcagatg
atgcgtcaggggctgcggcgtctgttgctgctgaatattccatcaccgataaaatatctg
cacgaaaaattgccgaacaaggcgaagctggggctgtatttcaacccttacggcaaagtg
ctcgatctgatcgatgactgcatctcctgcgcggtcgataagctgatcggtgaatttggc
gggccggtctggcaggaagctgaatttcagcgcctgcatgaaaaagtccgcgccgaactc
aatgacacggtggttgatatcgccaaacaggtcgagcagatcctgaccgcggtatttgcc
atcaataaacggctgaaaggccgggtcgatatggcgatggcgctggcgttaagcgatatt
aaaaaccagcttggcggtttggtgttccgcggctttgttaccgccaacggctggcagcgg
ctgccggatgtactgcgttacttacaggctatcgatcgcaggttggaaaaactggcgatc
gatgttcaccgcgatcgggcgcaaatgctgaaggtcgagcaggtgcagcaggcttggcgc
cagtggttgaataaactgccggccgagcgccgtgacgatgacgacgttaaggcggtgcgc
tggatgattgaggaattgcgggtgagctatttcgcccagcagttgggaacgccgttcccg
atatcggacaagcggatattgcaggcgatggagcagattgatgcgtga
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