KEGG   Brenneria goodwinii: AWC36_21930
Entry
AWC36_21930       CDS       T05061                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
bgj  Brenneria goodwinii
Pathway
bgj02024  Quorum sensing
bgj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bgj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AWC36_21930 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AWC36_21930 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bgj03019]
    AWC36_21930 (hfq)
   03036 Chromosome and associated proteins [BR:bgj03036]
    AWC36_21930 (hfq)
Messenger RNA biogenesis [BR:bgj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AWC36_21930 (hfq)
Chromosome and associated proteins [BR:bgj03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AWC36_21930 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: ATA26544
UniProt: A0A0G4JVC6
LinkDB
Position
5031978..5032274
AA seq 98 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNPGTSNYHGSNPAGQQQPQESDDAE
NT seq 297 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagatccgttcctgaacgcattgcgtcgcgaacgtgtt
ccggtttcgatttatttggtgaatggtattaagttgcagggtcagattgaatctttcgat
cagtttgtcattttgttaaaaaatacggttagccagatggtgtataaacacgccatttct
acagtagttccatctcgtccggtgtctcatcacagtaataatccaggcaccagcaattat
catggtagcaatccggctggacagcaacagccgcaggaaagtgatgacgctgaataa

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