Bradyrhizobium genosp. L: IC762_22040
Help
Entry
IC762_22040 CDS
T09261
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bgk
Bradyrhizobium genosp. L
Pathway
bgk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bgk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IC762_22040 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bgk03021
]
IC762_22040 (rpoC)
03400 DNA repair and recombination proteins [BR:
bgk03400
]
IC762_22040 (rpoC)
Enzymes [BR:
bgk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IC762_22040 (rpoC)
Transcription machinery [BR:
bgk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IC762_22040 (rpoC)
DNA repair and recombination proteins [BR:
bgk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IC762_22040 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
ApbA_C
DUF2130
Motif
Other DBs
NCBI-ProteinID:
QPF82437
UniProt:
A0A7S9CN59
LinkDB
All DBs
Position
complement(4638912..4643114)
Genome browser
AA seq
1400 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTA
MIGAEAIRELLKGLELEKLEATLRADMAETDSDIKHKKLAKRLKIVEAFRVSGNKPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVSIMREGLPGEGKIFGDMAELEHALH
SKVIHLHTKIKYRWEGIGEDGKKGKRWIETTAGRVMLGNLLPKSGKISYDIINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPHGKWKIVDQTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKAMMKEISATKKTASGADADINSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQSDCGTKLGIKMRAIIDAGTVVASLGSRILGRTV
CDDVRDPATNNVIVKRDTLMEESHVDMIQQAGVQEVKIRSALTCELVNGICGMCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSFVESNFDGKIVIRNKAI
ARNSEGHLVAMVRNMVVAIVDADGTERATHRIQYGSRMHVDEGDSVKRGQRIAEWDPYTR
PVLTEVEGSIGFEDLVEGQSISETLDESTGIAKRVVIDWRSTRGGADLRPAIVVKGKDGK
IMKLARGGDARYMLSVDAILSVDTNTKVMPGDILARISTESAKTRDITGGLPRVAELFEA
RKPKDAAIIAETAGTIRFGRDYKNKRRISIEPMDKTEEPREYLIPKGKHIHLQDGDIVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEI
TDQGDTDMISGEQVDKIEFDALNVKAKEEGKKPATGTPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMARIREVAMKRDKLILDEREKQ
QAAIVPTAPEAEPLALPPAE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaaattatgaatcttttcaatccgacgacgccggcccaggtcttcgaccag
atccggatttcgatcgcgtccccggagaagattctgtcgtggtcctacggcgagatcaag
aagccggagaccatcaactaccgcaccttcaagccggagcgcgacggcctgttctgcgcc
cgcatcttcgggccgatcaaggactacgagtgcctgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaggtgacgctgtcgcgcgtccggcgc
gagcgcatgggccatatcgagctggcggcgccggtcgcccacatctggttcctgaagtcg
ctgccgtcgcgcattggcctcttgctcgacatgacgctgaaggatctcgagcggatcctg
tatttcgaatattacgtcgtgctggagccgggcctcaccgcgctgaaggaccgtcagctg
ctgtcggaagacgagtatctgaaggcgcaggacgagtacggccaggacagcttcaccgcc
atgatcggcgccgaggcgatccgcgagctgctcaagggtctcgagctcgagaagctcgag
gcgacgctgcgtgccgacatggcggagaccgactccgacatcaagcacaagaagctcgcc
aagcggctgaagatcgtcgaggcattccgcgtctccggcaacaagccggaatggatgatc
atgacggtcgtgccggtgatcccgccggacctgcgcccgctggtgccgctggacggcggc
cgcttcgcgacgtcggatctcaacgacctctatcgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatggagctgcgtgcgcccgacatcatcatccgcaacgaaaagcgcatg
ctgcaggaggccgttgacgcgctgttcgacaacggccgccgcggccgcgtcatcacgggt
gccaacaagaggcctttgaagtcgctcgccgacatgctgaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
cccgagctgcgcctgcatcagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctactcgcggctcgacgccaagggcctgtccaccacggtgaagcaggccaag
aagctggtcgagaaggagcgtccggaggtctgggatatcctcgacgaggtgatccgcgag
catccggtgctgctcaaccgcgcgccgacgctgcatcgcctcggcatccaggcattcgag
ccggtcttgatcgagggcaaggcgatccagctgcatccgctggtctgcgccgccttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctggaagcgcagctg
gaagcgcgcgtgctgatgatgtcgaccaacaacatcctgcatccggcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctcggcctctactacgtctcgatcatgcgtgaa
ggcctgcccggcgagggcaagatcttcggcgacatggccgagctcgagcacgcgctgcac
tcgaaggtcatccacctccacaccaagatcaagtaccggtgggagggcatcggcgaggac
ggcaagaagggcaagcgctggatcgaaaccaccgcgggccgcgtcatgctcggcaatctg
ctgccgaagagcggcaagatctcctacgacatcatcaacaagctgatgaccaagcgtgag
atctccggcgtcatcgaccaggtctaccgccactgcggccagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttctacaacgcgttcaaggccggcatctcgttcggc
aaggacgacatggtggtgccgcacggcaagtggaagatcgtcgatcagacccgtacgctg
gcgaaggatttcgagcagcagtacaatgacggcctgatcacccatggcgagaagtacaac
aaggtcgtcgacgcctggtcgaaggccacggaagaaatcgccaaggcgatgatgaaggag
atctccgccaccaagaagacggcgagcggagccgatgccgacatcaactcgatctacatg
atggcgcactccggtgcgcgcggttcgccggcgcagatgcgccagctcgccggcatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctgtcggtgctcgagtacttcaactcgacccacggcgcccgcaagggcctggcg
gacaccgcgttgaagaccgcgaactccggctacctgacccgccgtctggtcgacgtcgca
caggactgcatcatcacgcagtccgattgcggcaccaagctcggcatcaagatgcgtgcc
atcatcgatgccggcaccgtggtcgcctcgctcggctcgcgcattctcggccgtaccgtg
tgtgacgacgtgcgcgatcccgccaccaacaacgtgatcgtcaagcgcgacacgctgatg
gaggagagccatgtcgacatgatccagcaggccggggtccaggaggtcaagatccgctcg
gcactgacctgcgagctcgtcaacggcatctgcggcatgtgctacggccgcgatctggcc
cgcggcactccggtcaaccacggtgaggccgtcggcgtcatcgcggcgcagtcgatcggc
gagcccggcacgcagttgacgatgcgtacgttccacatcggcggtgcggcgcagctcaac
gaacagtcgttcgtcgagtcgaacttcgacggcaagatcgtgatcaggaacaaggccatc
gcccgcaacagcgagggccatctggtcgcgatggtgcgcaacatggtggttgcgatcgtc
gatgccgacggcaccgagcgtgcaacccaccgtatccagtacggttcgcggatgcacgtc
gacgagggcgactcggtcaagcgcggccagcgtatcgccgagtgggatccctatacccgc
ccggtgctcaccgaagtcgagggttcgatcggcttcgaggatctggtcgagggccagtcg
atctcggaaacgctcgacgaatcgaccggtatcgccaagcgcgtggtcatcgactggcgc
tcgacgcgcggtggtgcggatctgcgtccggccatcgtggtcaagggcaaggacggcaag
atcatgaagctcgcgcgtggcggcgacgcccgctacatgctgtcggtcgatgccattctg
tcggtcgataccaatacgaaggtgatgccgggcgacatcctggcgcgtatctcgaccgag
agcgccaagacgcgtgacatcaccggcggtctgccgcgggtggcggaactgttcgaggcc
cgcaagccgaaggacgcggcgatcatcgcggaaaccgcaggcacgatccgcttcggccgc
gactacaagaacaagcgccgcatctcgatcgagccgatggacaagaccgaggagccgcgc
gagtacctgatcccgaagggcaagcacatccatctgcaggacggcgacatcgtcgaaaag
ggcgatttcatcgtcgaaggcaatccggcgccgcacgacatcctggcgatcaagggcatc
gaggaactcgctgcctatctggtcaacgaaatccaggaggtctaccggttgcagggcgtg
ctcatcaacgacaagcacatcgaggtgattgttcgtcagatgctgcagaaggtcgagatc
accgatcagggcgacaccgacatgatctcgggcgagcaggtcgacaagatcgagttcgac
gcgctcaacgtcaaagccaaggaggagggcaagaagcccgccacggggacgccggttctg
ctcggcatcaccaaggcgagcctgcagacccgctccttcttctcggcggcgtcgttccag
gagaccacccgcgtgctgaccgaagccgccgtcaacggcaaggtggacccgctcgagggc
ctcaaggagaacgtcattgtcggccgtctgatcccggctggcaccggcgcctcgatggcg
cggattcgcgaggtcgcaatgaagcgcgacaagctgatcctcgacgagcgcgagaagcag
caggcggcgatcgtgcctacggccccggaggcggagccgctggcgctgccgcccgcggaa
tag
DBGET
integrated database retrieval system
