Burkholderia glumae BGR1: bglu_1g13320
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Entry
bglu_1g13320 CDS
T00905
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bgl
Burkholderia glumae BGR1
Pathway
bgl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
bglu_1g13320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgl03400
]
bglu_1g13320
Enzymes [BR:
bgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
bglu_1g13320
DNA repair and recombination proteins [BR:
bgl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
bglu_1g13320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
SNF2-rel_dom
Glyco_tran_WecG
ERCC3_RAD25_C
SAP
Motif
Other DBs
NCBI-ProteinID:
ACR28483
LinkDB
All DBs
Position
1:complement(1457580..1461053)
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AA seq
1157 aa
AA seq
DB search
MPENASFPPSPVALVKAGQRFAFDGAPGSAEALAIARYLAAHRAQVPLLAVICANPADAQ
RLSQEIGFFAPEARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATT
ALYRMPPASFLAAYTFAFTQGERLDESKFKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLF
PMGSPLPYRIDLFDDQIDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRWR
ESFEGDPSRAPIYRDIGNGVPSAGIEYYLPLFFDDTATLFHYLPEHAHLVFTGDLDTAIR
RFTADTKQRYTFLSHDRERPILEPQRLFLSDDDFYTLAKPFARVVLPAQAAGGWATPLPP
LALERQADDPLASFRRYLQTTPNRVLFTVESAGRRETIAQLFAEHGLKPAGNDSYASWLA
GDERFALGVAPLASGFAVPGEGYAIVTETELYGSTGRRSGRRRQEQASNVDAMVRDLSEL
KVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAGESKLYVPVSQLHVISRYSGADP
DSAPLHQLGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALEPRDYVKFAESF
GFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSP
TTLLAEQHTQTFIDRFADWPVRVAELSRFKSTKEVNAAIRQINEGSVDIVIGTHKLLSSD
VQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIA
TAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKTMLEALVPEAR
IAIAHGQMHERELERVMREFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLH
QLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGE
VLGDKQSGEIHEIGFQLYTEMLNDAVKALKNGREPDLLAPLAATTEINLHAPAILPADYC
GDVQERLSLYKRLANCEDGDAIDAIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGISK
IDASEAAIGLQFVPNPPIDPMRIIEMVQKHRHVKLAGQDKLRIETRTPDLAIRVSTVKET
LRALGLPTTGRAAAPAR
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaaacgccagctttccgccgtcccccgtcgccctcgtcaaagcgggtcagcgc
ttcgccttcgatggcgcgcccggctccgccgaggccctcgcgatcgcccgctacctcgcc
gcacatcgggcccaggtgccgctgctggcggtgatctgcgcgaacccggccgacgcgcag
cggctgtcgcaggagatcggcttcttcgcgcccgaggcacgcgtgcggctgctgcccgac
tgggaaacgctgccctacgacaccttctcgccgcaccaggacctggtctcggaacggctg
gccacgctgcacgacctcggcgaaggccgctgcgacatcctgctcgtaccggccaccacg
gcgctctaccggatgccgcccgcctcgttcctggccgcctacacgttcgcgttcacccag
ggcgagcggctcgacgagtcgaagttcaaggcccagctgacgctggccggctacgagcac
gtgagccaggtggtgcgccccggcgaatactgcgtgcgcggctcgctgatcgacctgttc
ccgatgggctcgccgctgccctaccggatcgacctgttcgacgaccagatcgattcgatc
cgcgccttcgacccggatacgcagcgcagcctctacccggtgcgcgacgtgcgcctgctg
ccgggccgcgaattcccgttcgacgaggccgcgcgcacggcgtttcgcagccgctggcgc
gagagcttcgagggcgacccgagccgcgcgccgatctatcgcgacatcggcaacggcgtg
ccgtcggccggcatcgagtactacctgccgctgttcttcgacgacacggccacgctgttc
cactatctgcccgagcacgcccacctggtgttcacgggcgacctcgacacggcgatccgc
cgcttcacggccgacacgaaacagcgctacaccttcctctcgcacgaccgcgagcggccg
atcctcgaaccgcagcggctgttcctcagcgacgacgatttctacacgctcgccaagccg
ttcgcgcgcgtggtgctgcccgcgcaggccgccggcggctgggccaccccgctgccgccg
ctcgcgctggaacggcaggccgacgacccgctcgccagcttccgccgctatctgcagacc
accccgaaccgcgtgctgttcacggtcgaatcggcgggccgccgcgagaccatcgcccag
ctgttcgccgagcacggcctgaagccggccggcaacgacagctacgcgtcgtggctggcc
ggcgacgaacgcttcgcgctcggcgtggcgccgctcgcgagcggcttcgcggtgccgggc
gaaggctacgcgatcgtgaccgagaccgagctgtacggctcgaccggacgccgctcgggg
cgccgccgccaggagcaggccagcaacgtcgacgcgatggtgcgcgacctgtcggagctg
aaggtgggcgatccggtggtccacgcgcagcacggcatcggccgctacatggggctcgtc
tcgatggacctcggcgagggcgagaccgagttcctgcatctggaatatgcgggcgagagc
aagctctacgtgccggtctcgcagctgcacgtgatctcgcgctacagcggcgccgacccc
gacagcgcgccgctgcaccagctcggctcgggccagtgggagcgggccaagcgcaaggcg
gcgcaacagatccgcgacaccgccgcggagctgctgaacctctacgcgcggcgcgccgcg
cgcgaaggccatgcgttcgcgctcgagccgcgcgactacgtgaagttcgccgagagcttc
ggcttcgaggaaacgcccgaccaggccgccgcgatcgcggccgtgatcggcgacatgacg
agcggcaagccgatggaccgcctggtatgcggcgacgtgggcttcggcaagaccgaggtg
gcgctgcgcgccgcgttcatcgcggtgatgggcggcaagcaggtggcgctgctctcgccc
accacgctgctcgccgagcagcatacgcagaccttcatcgaccgcttcgccgactggccg
gtgcgggtggccgagctgtcgcgcttcaagtcgaccaaggaagtcaacgcggcgatccgg
cagatcaacgagggcagcgtcgacatcgtgatcggcacccacaagctgctgtcctcggac
gtgcagttcaagcgcctcgggctcgtcatcatcgacgaggagcatcgcttcggggtgcgc
cagaaggaggcgctgaaggcgctgcgcgccgaggtggacgtgctgacgctgaccgccacg
ccgatcccgcgcacgctgggcatggcgctggaaggcctgcgcgacttctcggtgatcgcc
accgcgccgcagaagcggctcgcgatcaagaccttcgtgcggcgcgaggaggaaagcgtg
atccgcgaggcgatgctgcgcgagctcaagcgcggcggccaggtgtacttcctgcacaac
gaggtggagacgatcgagaaccgcaagacgatgctggaggcgctggtgcccgaggcgcgc
atcgcgatcgcccacggccagatgcacgagcgcgagctggagcgcgtgatgcgcgagttc
gtcgcccagcgcgccaacgtgctgctatgcacgaccatcatcgagaccggcatcgacgtg
ccgagcgcgaacaccatcatcatgcatcgcgccgacaagttcggcctcgcccagctgcac
cagctgcgcgggcgcgtcggccgctcgcaccaccaggcctacgcctacctgctggtgcac
gacccgcaggcgctcaccaagcaggcgcagcggcggctcgaggcgatccagcagatggag
gaactcggctcgggcttctatctggcgatgcacgacctggagatccgcggcaccggcgag
gtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccagctctacaccgag
atgctcaacgacgcggtgaaggcgctcaagaacggccgcgagccggacctgctcgcgccg
ctggcggccaccaccgagatcaacctgcacgcgccggcgatcctgcccgccgactattgc
ggcgacgtgcaggaacggctttcgctctacaagcggctcgcgaactgcgaggacggcgac
gcgatcgacgcgatccaggaggagctgatcgaccgcttcggcaagctgccgccgcaggcc
catgcgctggtcgagacgcaccggctgcggctcgcggccaagccgctcggcatcagcaag
atcgatgcgagcgaggccgcgatcggcctgcagttcgtgccgaatccgccgatcgacccg
atgcgcatcatcgagatggtgcagaagcaccgccacgtcaagctcgccggccaggacaag
ctgcgcatcgagacgcgcacgcccgacctggcgatccgcgtctcgaccgtcaaggaaacg
ctgcgggcgctggggctgcccaccacgggccgcgccgccgcgccggcacgctga
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