Burkholderia glumae BGR1: bglu_1g19620
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Entry
bglu_1g19620 CDS
T00905
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bgl
Burkholderia glumae BGR1
Pathway
bgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
bglu_1g19620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgl03019
]
bglu_1g19620
03016 Transfer RNA biogenesis [BR:
bgl03016
]
bglu_1g19620
Enzymes [BR:
bgl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
bglu_1g19620
Messenger RNA biogenesis [BR:
bgl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
bglu_1g19620
Transfer RNA biogenesis [BR:
bgl03016
]
Prokaryotic type
tRNA degradation factors
bglu_1g19620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
RNase_II_C_S1
WHD_RNase_R
RcsD_ABL
HAS-barrel
CSD
PF0610-like_N
Motif
Other DBs
NCBI-ProteinID:
ACR29071
LinkDB
All DBs
Position
1:complement(2141743..2144208)
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AA seq
821 aa
AA seq
DB search
MSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLD
KRGHYQLTHPSNFVAGRVQGHRDGYGFLIRDDGQDDLFLPSGEMQKVMHNDRVLARIVGY
DRRGRPEGHVVEVTDRANKRVIGRLLNENGALICAPEDKRIGHDILITQNPKKAKVGQVV
VVELTEFPSRHSQPLGRVEEVLGDIDDPGMEIEIAVRKYGVPHEFSPAALAASAALPDKV
RPVDLRYRVDLRDVPLVTIDGEDARDFDDAVYCEPMKVGRGDGFRLIVAIADVSHYVKPG
EALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLVCDMVVTARGEVKAYQ
FYPAVIHSAARLTYTEVAAVLGNTKGPEAARRADLLPHLQDLYGVYKALFAARQKRGAID
FDTTETYIVCNAQGKIEQILPRQRNDAHKLIEECMLAANVCAADFMKRHKQSGLYRVHAG
PTAEKLENLRSFLRGMGLTLGGGEKPHASDYAALMAKIRERPDAQMLQPMLLRSMQQAVY
SPDNIGHFGLAYDAYAHFTSPIRRYPDLLTHRAIYAILSGHRYTPKAPDGVTLNTALSPR
ARAMQKEDGEARGRARSNDAIWEELGLHCSANERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTPFGIFVQLDTLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYRLSDRVR
VQVGRVDLDARKIDFRLVRDTPVKAPRGAVPAPAERGAARVRAMPGVTSEDEPAVGRRKA
AVGSTGAPAAKDARAAHPAARKKGGTAAKSPAKKARPRKKY
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaagtatccgtatcccatcccgagccgcgaagaaatcctcggcgtgctgcgcacg
agcgacgccccgctggcggcgaacgacatagccgaagcactgtcgatcaagcgccaggag
cgcgagggcttcttccggcgcgtcgccgcgatggagcgcgacggccagatccggctcgac
aagcgcgggcactatcaactgactcatccgtcgaacttcgtggccggacgcgtgcagggc
catcgcgacggctatggattcctgatccgcgacgacggccaggacgacctgttcctgccg
agcggcgagatgcagaaggtcatgcacaacgatcgcgtgctcgcacggatcgtcggctac
gaccgccgcggccgcccggaaggacatgtggtcgaggtcaccgaccgcgccaacaagcgc
gtgatcggccgcctgctcaacgagaacggtgcgctgatctgcgcccccgaggacaagcgg
atcggccacgacatcctgatcacccagaatccgaagaaggccaaggtcggccaggtcgtg
gtggtcgagctgaccgagtttccgagccgccattcgcagccgctcggccgtgtcgaggaa
gtgctcggcgacatcgacgatccgggcatggagatcgagatcgcggtacgcaagtacggt
gtaccgcacgagttcagcccggccgcgctggccgcctcggccgcgctgccggacaaggtg
cgtccggtcgacctgcgctaccgcgtcgatctgcgcgacgtgccgctcgtcacgatcgac
ggcgaggacgcgcgcgacttcgacgacgcggtctactgcgaaccgatgaaggtcggccgt
ggcgacggcttccggctgatcgtcgcgatcgccgacgtctcgcactacgtgaagccgggc
gaggcgctcgacgtcgacgcgctcgagcgcagcacatcggtctactttccgcgccgcgtg
atcccgatgctgcccgagaagctgtcgaacgggctctgctcgctgaacccgcaggtggac
cgctgcgtgctggtctgcgacatggtggtgaccgcgcgcggcgaagtgaaggcctatcag
ttctatccggccgtgatccactcggcggcgcgcctgacctataccgaggtcgcggccgtg
ctgggcaacaccaaggggccggaggccgcgcgccgtgccgacctgctgcctcatctgcag
gacctctacggcgtctacaaggcactgttcgcggcgcgtcagaagcgcggcgcgatcgat
ttcgataccaccgagacctacatcgtctgcaacgcgcagggcaagatcgagcagatcctg
ccgcgccagcgcaacgacgcgcacaagctgatcgaggaatgcatgctggccgccaacgtc
tgcgcggccgacttcatgaagcgccacaagcagtcgggcctgtaccgcgttcacgccggt
ccgacggccgagaagctcgagaacctgcgctcgttcctgcgcggcatggggctcacgctc
ggcggcggcgagaagcctcacgccagcgactacgcggcgctgatggcgaagatccgcgag
cggcccgacgcacagatgctgcagccgatgctgctgcgctcgatgcagcaagccgtctac
agccccgacaacatcggccacttcggtctggcctacgatgcctacgcgcacttcacgagc
ccgatccgccgctatcccgatctgctcacgcaccgcgcgatctacgcgatcctgtccggc
caccggtacacgccgaaggcgcccgacggcgtgacgctgaacacggcgctctcgccgcgg
gcccgcgcgatgcagaaggaagacggcgaagcacgcggccgcgcgcgttcgaacgacgcg
atctgggaagagctcggcctgcactgctcggccaacgagcgccgcgccgacgaagcctcg
cgcgacgtcgaggcctggctcaagtgctatttcatgcgcgacaagctcggcgaggaatac
ggcgggatggtcaacggcgtgacgccgttcgggatcttcgtgcagctcgacacgctgttc
atcgaggggctcgtgcacgtcaccgaactcggctccgactatttccagtacgacgagatc
aagaacgaactgcgcggcgagcgtaccggtatccgctaccggctgtcggaccgcgtgcgc
gtgcaggtcggccgcgtcgatctcgacgcgcgcaagatcgacttccggctggtgcgcgac
acgcccgtgaaggcgccgcgcggagcggtcccggcgcccgcggaacgcggcgcggcgcgc
gtgcgtgcgatgccgggcgtgacgagcgaggacgagccggcggtggggcgccgcaaggcg
gccgtcggcagcaccggcgcgcccgccgccaaggatgcgcgcgccgcgcatccggccgcc
aggaagaagggcggcacggcggccaagtcgccggccaaaaaggcgcgtccgcgcaagaaa
tattga
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