Bordetella genomosp. 13: CAL15_10055
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Entry
CAL15_10055 CDS
T05441
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bgm
Bordetella genomosp. 13
Pathway
bgm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bgm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CAL15_10055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bgm03021
]
CAL15_10055
Transcription machinery [BR:
bgm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CAL15_10055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
DUF720
Motif
Other DBs
NCBI-ProteinID:
ARP94697
UniProt:
A0A1W6ZBJ9
LinkDB
All DBs
Position
complement(2220505..2222754)
Genome browser
AA seq
749 aa
AA seq
DB search
MTRPTGKSTSEIDTDQVPTKSAGRAVSMAAEKAPAKAAVKVAKTAAKTAAKKVAAADKPA
ARAKKAEDKLADLVGAARPAAGGTGRRPGRPAKNANNDSDGFEDPMDGEGEVLPDLKPPK
RGGKRGKGDPKDLIARGPVTPEEYEARRNRLKQLIKLGKDRGYLTYGEINDHLPDDLVDA
EAIDGIISTFSDMGIAVYDQAPDAETLLMSENAPVASNDDDVEDEAEAALTTVDSDFGRT
TDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILAHITRVREN
QVQIDEVVDGLVDPEDGEEYAGAGVSADEDENDEGPAGGMSSKQLEDLRVKALSKFDEVG
RQFERMRQSYEKDGYKSDAYVKAQESIQNELMGIRFTAKMVEKLADTLRNQVEEVRQLER
AVLHTCVDRAGMPRSHFLKVFPGNETNLQWVIDEAAAGHPYAETLERQIPAVQELQQKLI
DLQTRVVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLI
QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNR
ISRQILQETGAEPDPATLAQKMDMPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIED
TSTLAPSDAALHGSMRDVVKEVLDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRE
RIRQIEAKALRKLRHPSRADKLKSFLEGQ
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgaccagacccacaggcaaatccacctctgaaatcgatacggaccaggtcccgaccaag
tcggccggccgtgccgtcagcatggcggcggaaaaggcgcctgccaaggctgcggtgaag
gtcgcgaagacggcggccaagaccgccgccaagaaggtggctgccgccgacaagccggct
gcgcgcgcgaaaaaggccgaggacaagctcgccgacctggtcggcgccgcgcgtcccgct
gccggcggcaccggccgccgcccgggtcgtccggcgaagaacgccaacaacgactccgac
ggcttcgaggatccgatggacggcgagggcgaagtgctgcccgacctgaagccgcccaag
cgtggcggcaagcgcggcaagggtgatcccaaggatctgatcgcccgcggccccgtcacg
cccgaagaatacgaagcgcgccgcaaccgcctgaagcagctgatcaagctgggcaaggac
cgcggttatctcacctacggcgaaatcaacgaccatctgcccgacgatctggtcgacgcc
gaagccatcgacggcatcatcagcacgttcagcgacatggggatcgcggtctacgaccag
gctcccgacgccgaaaccctgctgatgagcgagaacgctccggtggcctcgaacgatgac
gacgtcgaggacgaagccgaggccgcgctgaccaccgtggattccgacttcggccgcacc
accgaccccgtgcgcatgtacatgcgcgagatgggttcggtcgagctgctgacgcgcgaa
ggcgaaatcgaaatcgccaagcgcatcgaagacggcctgaagcacatggtgatggccatc
tccgcgtgtccgaccaccatcaacgagatcctggcacacatcacgcgcgtgcgtgagaac
caggtgcagatcgatgaagtggtcgacggcctggtcgatccggaagacggcgaggagtac
gccggcgccggcgtgtccgccgacgaggacgagaacgacgaaggcccggcgggcggcatg
tccagcaagcagctggaagatctgcgcgtgaaggccctgtccaagttcgacgaagtcggc
cgccagttcgagcgcatgcgccagtcgtacgagaaggacggctacaagtccgacgcgtac
gtcaaggctcaggaaagcatccagaacgaactgatgggcatccgcttcacggccaagatg
gtcgagaagctggccgatacgctgcgcaaccaggtcgaagaggtgcgccagctcgagcgc
gccgtcctgcacacctgcgtggaccgcgccggcatgccgcgctcgcacttccttaaggtg
ttccccggcaacgagaccaacctgcagtgggtgatcgacgaggcggccgccggccatccg
tacgccgagacgctcgagcgccagattcctgccgtgcaggaactgcagcagaagctgatc
gacctgcagacccgcgtggtgctgccgctgaaggacctcaaggacgtcaacaagcgcatg
gccaccggcgaggcgaaggcccgcaaggccaagcgcgaaatgaccgaggccaacctgcgc
ctggtgatctccatcgccaagaagtacacgaaccgcggcctgcagttcctggacctgatc
caggagggcaacatcggcctgatgaaggcggtggacaagttcgagtaccggcgcggctac
aagttctccacgtacgccacgtggtggatccgccaggccatcacgcgctcgatcgccgac
caggcccgcaccatccgcattccggtccacatgatcgaaacgatcaacaagatgaaccgg
atcagccgccagatcctgcaggaaacgggcgccgagcccgatcccgcgaccctggcgcag
aagatggacatgcccgaggacaagatccgcaagatcctgaagatcgccaaggagccgatc
tcgatggaaacgcccatcggggacgacgacgattcgcatctgggcgacttcatcgaggac
acgtccacgctggcgccttcggacgctgcgctgcatggttcgatgcgcgatgtggtcaag
gaagtgctagactcgctcacccccagggaggccaaggtgctgcgcatgcgcttcggcatc
gaaatgagcaccgaccagacgctcgaagaggtcggcaagcagttcgacgtcacccgcgag
cgcatccgtcaaatagaggccaaggcgttgcgcaaactgcgtcaccccagtcgcgccgac
aagctcaagagcttcctggaagggcagtaa
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