Bordetella genomosp. 13: CAL15_14850
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Entry
CAL15_14850 CDS
T05441
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bgm
Bordetella genomosp. 13
Pathway
bgm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAL15_14850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgm03019
]
CAL15_14850
03016 Transfer RNA biogenesis [BR:
bgm03016
]
CAL15_14850
Enzymes [BR:
bgm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CAL15_14850
Messenger RNA biogenesis [BR:
bgm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CAL15_14850
Transfer RNA biogenesis [BR:
bgm03016
]
Prokaryotic type
tRNA degradation factors
CAL15_14850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
DUF5818
HTH_20
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
ARP95551
UniProt:
A0A1W6ZDY0
LinkDB
All DBs
Position
complement(3320784..3323240)
Genome browser
AA seq
818 aa
AA seq
DB search
MAKRPNNDSNNNRSTSVLPDAPPDFDPDVPSREAILTALRSAAVPLSPEELAQRMGVERP
ATLVGFERRLGAMERDGQLMPNRKGVLLLATKLDFVAGKVQGHRDGFGFLLRDDGGPDIF
LATREMSKVLHGDRVLVKPTGEYRGKPEGTIVEVIERRTNRLVGRFLHEHGLSIVVPEDQ
RIKHDILIPPGDTNGAQHGQVVSVQIMEQPTRHTQPLGRVYEVLGEIDDPGMEIEIAVRK
FDVPVDFSEPAQKQAARLPDSVRKTDLKNRVDLRDVPLITIDGEDARDFDDAVYCEPVDL
GTGQRKRPGWRLLVAIADVSHYVRSEDPLDVDAFERGTSVYFPRRVIPMLPESLSNGLCS
LNPHVDRLVLVCDMVIPASGAKAGTVTAYQFYNAVMHSHARTTYTSIWEALQQPGGPAAN
ALGPVLPHVQHLYELYQLLAQSRRKRGAIDFETVETKIVCNQLGRIEQIVGVVRNDAHKL
IEECMLAANTCAADFMSRSKHPGLYRIHEGPTPERLQSLREFLRTLGLSLGGGDEPTASD
YGEFLDSVRGRPDFPLLQTMCLRSMQQAIYSPDNVGHFGLSYPGYTHFTSPIRRYPDLLT
HRVIKALLVAERYVPKLEDQPIMVGGTKHEHEHAIWEKMGLILSASERRADEASRDVEAW
LKCWFVKERVGEDFSGTVTGVASFGIFVTLDTLHVEGLVHVSELGGEYFQFNDALHELRG
ERTGMRYRLTDKVQVQVARVDLEARRIEFRLVKGTSFDALRKQAAKNPDEPRRVKRAAAP
KPLALKGTTAKQRRAEAKRASKPAKQARPAKKAPRAGR
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaaacgaccgaataacgactcgaataacaaccgctccacgtccgtcttgcccgat
gcgccgcccgacttcgatcccgatgttccatcgcgcgaagccattctgaccgcattgcgt
tcggccgccgtacccctgtcaccggaagagctggcgcagcgcatgggcgtcgaacggccg
gccacgctggtcggtttcgagcgccgcctgggggcgatggagcgggacggccagttgatg
cccaaccgcaagggagtcctgctgctggccaccaagctcgacttcgtggccggcaaggtg
caagggcatcgggacggcttcggtttcctgctgcgcgacgacggcggcccggacatcttc
ctcgccacgcgcgagatgtccaaggtgctgcacggcgaccgcgtgctggtcaagcccacc
ggcgaataccgcggcaagcccgagggcaccatcgtcgaggtcatcgagcggcgcaccaac
cgcctggtggggcgcttcctgcacgagcacggcctgtccatcgtggtgcccgaggaccag
cgcatcaagcacgacatcctgatcccgcccggcgacaccaatggcgcgcagcatggccag
gtggtgtcggtgcagatcatggagcagcccacccgccacacgcagccgctgggccgcgtg
tacgaggtgctgggcgagatcgacgatcccggcatggagatcgagatcgccgtgcgcaag
ttcgatgtgccggtggacttcagcgagcccgcgcagaagcaggccgcccgcctgcccgac
agcgtgcgcaagaccgacctgaagaaccgcgtcgacctgcgcgacgtgccgctgatcacc
atcgacggcgaagacgcgcgcgacttcgacgatgccgtctattgcgaacccgtcgacctt
ggcaccggccagcgcaagcggccgggctggcgattgctggtggccattgccgacgtcagc
cactacgtgcgcagcgaggacccgctggacgtggatgcgttcgagcgcggcaccagcgtg
tacttcccgcgccgcgtcatcccgatgttgcccgagtcgctgtccaacgggctgtgctcg
ctgaatccccacgtcgaccgcctggtgctggtgtgcgacatggtcattcctgccagcggc
gcgaaggccggcacggtcaccgcctatcagttctacaacgcggtcatgcactcgcatgcg
cgcaccacctacaccagcatctgggaagcgctgcagcagcccggcggccccgcggccaac
gcgctgggccccgtgctgccgcacgtgcagcacctgtacgagctgtaccagctgctggcc
cagtcgcgccgcaagcgcggcgccatcgacttcgaaacggtcgagaccaagatcgtctgc
aaccagctgggccgcatcgagcagatcgtgggcgtggtgcgcaacgacgcgcacaagctc
atcgaggaatgcatgctggccgccaacacctgcgcggccgacttcatgagccgcagcaag
catcccggcctgtatcgcatccacgaaggtcccacgcccgaacgcctgcagtcgctgcgc
gaattcctgcgcacgctgggcctgtcgctgggcggcggcgacgaacccaccgccagcgac
tatggcgagttcctcgacagcgtgcgcggccgtcccgatttcccgctgcttcagaccatg
tgcctgcgctcgatgcagcaggccatctacagccccgacaacgtgggccacttcggcctg
tcgtatccgggctatacgcacttcacctcgccgatccgccgctatcccgacctgctcacg
caccgcgtgatcaaggcgctgctggtggcggagcgctacgtgcccaagctcgaggaccag
cccatcatggtgggcggcacgaaacacgagcacgagcacgccatctgggaaaagatgggc
ctgatcctgtcggccagcgagcgccgcgcggacgaggcctcgcgcgacgtcgaggcctgg
ctcaagtgctggttcgtgaaggagcgcgtgggcgaggacttcagcggcacggtcaccggc
gtggccagcttcggcatcttcgtcacgctggatacgctgcatgtggagggactggtgcac
gtgtccgaactgggcggcgagtacttccagttcaacgacgcgctgcacgaattgcgcggt
gagcgcaccggcatgcgctaccggctgaccgacaaggtgcaggtgcaggtggcgcgggtc
gacctcgaggcgcgtcgcatcgagttccgcctggtcaagggcaccagcttcgacgcgctg
cgcaagcaggccgccaagaatcccgacgagccgcgccgtgtcaagcgggccgcggcgccc
aagcccctggcgttgaagggcacgacggccaagcagcgccgcgccgaggccaagcgcgcc
agcaagcccgcgaaacaggcgcgcccggccaagaaggctccgcgcgcaggccgctag
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